PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007246.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 298aa    MW: 32657.2 Da    PI: 9.6028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007246.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.6e-15211257455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn+ Er+RRd iN+++  L++l+P+a      K +Ka++L ++++Y+++Lq
  Pbr007246.1 211 VHNQSERKRRDLINQKIKALQRLVPNA-----SKTDKASMLDEVIKYLQQLQ 257
                  6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.882207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-17210277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16210262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12211257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.91E-14212261No hitNo description
SMARTSM003531.9E-15213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MQQQSHPNAS LLVPLSNFDV TELKLEKGQL AMHGLGALLR TAQSKPTWSR SRACDTLESI  60
VDQATCHKRD PNIIRHDQTP ANTSSVVASS GETWTDSSVQ VPLEQGWIRK RSRSDSGFLE  120
NNFSTNSIHA EHADPSSCAS PGASVRLCRD NHTTTSTLVS FESPPSLKTK STDEDSASHG  180
GLENRDDGRK TTKGGKSSRS HSTRPGRAAA VHNQSERKRR DLINQKIKAL QRLVPNASKT  240
DKASMLDEVI KYLQQLQAQQ SMNMDLFNWM AAHYCQQVTP ATAASSSQPQ ANDVRRN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007246.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338700.10.0PREDICTED: transcription factor PIF7-like isoform X2
TrEMBLA0A498I2S61e-164A0A498I2S6_MALDO; Uncharacterized protein
STRINGXP_009338693.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-37bHLH family protein