PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007197.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 374aa    MW: 41403.8 Da    PI: 7.8923
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007197.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP86.94.6e-27571852106
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssa........ 70 
                   g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+L + ++sk i+WLl   ++ i++l+ +                     +   +        
  Pbr007197.1  57 FGGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLRLSQPSKVIDWLLGVTEQDIDKLPPLqvphgfghqfhqpmlyphqasN---Sliapffdv 151
                  689*************************************************************7777777777776666543330...133333222 PP

          TCP  71 sec..eaesssssasnsssgkaaksaa.kskksqksaas 106
                  +++  ea++  +++      ++ak +  k++++q+++++
  Pbr007197.1 152 NSTfmEADQVDEQVR-----DQAKGKSiKTNDEQDDQNH 185
                  111222222222222.....2233333122222222221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-2559183IPR005333Transcription factor, TCP
PROSITE profilePS5136926.32859117IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MITNSRDKGF QEKQEGHNNN DGNNNSSFNK ASSSSTTTSR QWSVFRNPRI VRVSRAFGGK  60
DRHSKVSTVR GLRDRRIRLS VPTAIQLYDL QDRLRLSQPS KVIDWLLGVT EQDIDKLPPL  120
QVPHGFGHQF HQPMLYPHQA SNSLIAPFFD VNSTFMEADQ VDEQVRDQAK GKSIKTNDEQ  180
DDQNHHDHEG NVSGQLLAQK LFPIGNHPSS IPGLLNNAMA YNYYHNYSEP STLSLAQFGS  240
PGFPQGPQTD QHRSHMMSTN ALSFSTPMAS GSQLCFCPPT ATPTLFGSYP PYMTNPIVEG  300
TSTATDQPRQ ASHFQFLSSS SNSQNFLANN ALMPSLHSIG SSLKSFPSLV DPKQQLHLDS  360
QNNNASQPNK DVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1764118155Putative transcription factor PCF6
5zkt_B1e-1764118155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007197.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338119.10.0PREDICTED: transcription factor TCP5-like
TrEMBLA0A498I0R00.0A0A498I0R0_MALDO; Uncharacterized protein
STRINGXP_009338119.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-45TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5