PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007180.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 29453.3 Da    PI: 9.7949
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007180.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.44.4e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrq tfskRr g++KKA+E+SvLCdaeva+iifs++gkl+eys+
  Pbr007180.1  9 KRIENKINRQGTFSKRRSGLMKKAQEISVLCDAEVALIIFSTKGKLFEYSN 59
                 79***********************************************95 PP
2K-box109.53.8e-36771743100
        K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  +++  +++++ + s++ e+akLk+++e Lqr+qRh++GedL+sLslkeLq+LeqqL+++lk+iRs+Kn++++e+i+elqkk k+lqe+n+ L kk++e
  Pbr007180.1  77 ERQLLANDNESTGSWTLEHAKLKARVEVLQRNQRHYMGEDLQSLSLKELQNLEQQLDSALKHIRSRKNQVMYESISELQKKDKALQEQNNLLAKKVKE 174
                  5566667788899**********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.076161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-33290IPR002100Transcription factor, MADS-box
CDDcd002652.97E-39279No hitNo description
PRINTSPR004041.7E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-2987172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.2288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQGT FSKRRSGLMK KAQEISVLCD AEVALIIFST KGKLFEYSND  60
SCMERILERY ERYSYAERQL LANDNESTGS WTLEHAKLKA RVEVLQRNQR HYMGEDLQSL  120
SLKELQNLEQ QLDSALKHIR SRKNQVMYES ISELQKKDKA LQEQNNLLAK KVKEKEKAVA  180
QRPQLEHAQE QRLDSSSSLL PQALQSLNFG SGSNYQAIRS SEGIPGDNQQ DGDETPTPRR  240
PNMLLPPWML RHLNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-21174173Myocyte-specific enhancer factor 2B
1tqe_Q4e-21174173Myocyte-specific enhancer factor 2B
1tqe_R4e-21174173Myocyte-specific enhancer factor 2B
1tqe_S4e-21174173Myocyte-specific enhancer factor 2B
6byy_A4e-21174173MEF2 CHIMERA
6byy_B4e-21174173MEF2 CHIMERA
6byy_C4e-21174173MEF2 CHIMERA
6byy_D4e-21174173MEF2 CHIMERA
6bz1_A4e-21174173MEF2 CHIMERA
6bz1_B4e-21174173MEF2 CHIMERA
6bz1_C4e-21174173MEF2 CHIMERA
6bz1_D4e-21174173MEF2 CHIMERA
6c9l_A4e-21174173Myocyte-specific enhancer factor 2B
6c9l_B4e-21174173Myocyte-specific enhancer factor 2B
6c9l_C4e-21174173Myocyte-specific enhancer factor 2B
6c9l_D4e-21174173Myocyte-specific enhancer factor 2B
6c9l_E4e-21174173Myocyte-specific enhancer factor 2B
6c9l_F4e-21174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007180.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6231650.0AB623165.2 Pyrus pyrifolia var. culta PpMADS3-1 mRNA for MASDS-box protein, complete cds.
GenBankKP1640010.0KP164001.1 Pyrus pyrifolia clone PpAP1-2 AP1 MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018498760.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ424291e-118AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A0D4ZY390.0A0A0D4ZY39_PYRPY; AP1 MADS-box protein
TrEMBLJ7MF950.0J7MF95_PYRPY; MASDS-box protein
STRINGXP_009337966.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-94MIKC_MADS family protein
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]