PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr007170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Dof | ||||||||
Protein Properties | Length: 324aa MW: 34900.1 Da PI: 7.5874 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.9 | 1e-38 | 31 | 90 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds +tkfCyynny+lsqPr+fCkaCrryWtkGG lrnvPvGgg+rk k+s Pbr007170.1 31 NQQALKCPRCDSLHTKFCYYNNYNLSQPRHFCKACRRYWTKGGVLRNVPVGGGCRKTKRS 90 57899****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-24 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.0E-33 | 33 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.339 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 37 | 73 | IPR003851 | Zinc finger, Dof-type |
Gene3D | G3DSA:1.10.565.10 | 7.7E-4 | 59 | 132 | IPR000536 | Nuclear hormone receptor, ligand-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043401 | Biological Process | steroid hormone mediated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MQDIHSVRGG GRFFGGSGGG DRRLRPHQHP NQQALKCPRC DSLHTKFCYY NNYNLSQPRH 60 FCKACRRYWT KGGVLRNVPV GGGCRKTKRS KPKNSSSSSP TSSPPPPPPQ PNSAHQNKSS 120 SHSSSESSSL TNPAAAAEAV SAPSSTCSAS NLLTNIHNPE SKFFICQGGA NGGFEPGVSA 180 AALLEQSTEI NGMSSEIGSF TSLITSSNDV PFSFGNINGL PFDQQDQVGN HHHNQVHQNQ 240 WGQQNQEVKM QEISGGLLDQ TAQVDLSVFQ NRSNGVGGGE YGPLDWQPGS GDQGFFDLPN 300 TVDQAYWSQS QWADQDHPTL YLP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr007170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009337878.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
TrEMBL | D9ZIX7 | 1e-160 | D9ZIX7_MALDO; DOF domain class transcription factor | ||||
STRING | XP_009337878.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5998 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 7e-31 | OBF binding protein 4 |