PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr007125.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 472aa MW: 53460.1 Da PI: 6.9722 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 129.8 | 2.6e-40 | 180 | 346 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa..sec...eaess 78 + k+drhski T++g+RdRR+Rls+e+a++fF Lqd L fdk+skt+eWLl q++p+ik+l ++ + s+a ++c + Pbr007125.1 180 TNKRDRHSKINTARGPRDRRMRLSLEVARKFFGLQDVLEFDKASKTVEWLLIQSEPEIKKLSRDhhrkfnyknmvrcaktT-SPAtsESCeilS---G 273 679****************************************************************99999999999852.333333443332...2 PP TCP 79 sssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 + +a +++ k ++++ k ++q+++ +++ lak sr+karararertrekm+ ++k Pbr007125.1 274 VDEAP-TNINisnggnddndkvrscgiKPSAKERKIVHRQSRKRAFHPLAKASREKARARARERTREKMQRSKK 346 22222.1111334455666788999975555555666677777778***********************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-41 | 181 | 343 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.941 | 182 | 240 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.839 | 323 | 340 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MFPSDNTDNV NELVPVSYPH VDQPFFHSRP FDHDITTVTP NFFTNSNPNP NSGQQRGGEE 60 NLHQQHHHPP LSLLYFPSPF EDDDVLLFQQ HHHQEPDHIE ISLHESQVPP YFMKEAAAAA 120 TATAAAAATA ADDNTGTVVG DDHQKTTTTS VNIKMVDWDS NKNGHHMDMD DQPQIPRRRT 180 NKRDRHSKIN TARGPRDRRM RLSLEVARKF FGLQDVLEFD KASKTVEWLL IQSEPEIKKL 240 SRDHHRKFNY KNMVRCAKTT SPATSESCEI LSGVDEAPTN INISNGGNDD NDKVRSCGIK 300 PSAKERKIVH RQSRKRAFHP LAKASREKAR ARARERTREK MQRSKKPSND QAKLSRLNSW 360 NPFESGEESS AYNNNMNNTA NDQPDSLVAL RPYPDGVEEP LSSSLAGDIQ DMVVDHGATH 420 DAMVVMGKWS PSSVFTPLQQ NTGISQEHQQ FADFQFFDKP WDVYNNTHKL F* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr007125.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM501065 | 0.0 | KM501065.1 Malus domestica TCP domain-containing protein 18 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009337431.1 | 0.0 | PREDICTED: transcription factor TCP12-like | ||||
TrEMBL | A0A498I183 | 0.0 | A0A498I183_MALDO; Uncharacterized protein | ||||
STRING | XP_009337431.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 4e-24 | TCP domain protein 12 |