PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr006864.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 755aa MW: 86548.6 Da PI: 8.0889 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.6 | 5.5e-20 | 59 | 145 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y +Y+ + GF+vrk++ k++ + g + + t+vCsk+g+r++++k+ e+ + +++r+gC+a+++ ++k+gk+++++++ HnH+l Pbr006864.2 59 YVKYGAKHGFDVRKHHRKTN-KMGLVSRVTYVCSKQGHRRKDNKRCESITYSLPSSRVGCEAHMVCLLMKTGKFKIISFNASHNHDLI 145 99***********9887766.7778********************999999**********************************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.6E-16 | 59 | 145 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.2E-32 | 267 | 361 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.656 | 536 | 581 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.3E-6 | 556 | 583 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 4.7E-4 | 557 | 581 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 755 aa Download sequence Send to blast |
MEKNDCIRLS SESLSGEEVD LQGNGSSLRS NDPDKVEEMT EDLKLGIEFS SHDSAYVAYV 60 KYGAKHGFDV RKHHRKTNKM GLVSRVTYVC SKQGHRRKDN KRCESITYSL PSSRVGCEAH 120 MVCLLMKTGK FKIISFNASH NHDLIKAPMK HMLKVNRCLS RAQKGHVADG EKSRSPIKET 180 VELVSREVEG QENLGSGDND YRNYLQRKRK LKMEKGDAGA ILQYFQNMRE DNSSCFYSVQ 240 LDEDDRITNI FWADARSVCD YKAFGDVVCF DTTYQINEYG RPFAPLIGVN HHKQIVVFGA 300 ALLYDDSRDS FKWLFETFLA AMSGKQPKTI LTDQSAAMAE AILEVFPEAN HRLCAWHIYQ 360 KAAKNLSHVF HASKQFACDL SKCVYEYEDK DAWLSAWNDM LENYDLKEDN WLKEIYEVRE 420 KWALVYERHT FTADLMSIQH KESITNVLKK HLMPSHDLLC FFEHFENILA DRRDKELQAD 480 FKMMQTVPSP VINVEMLERA VEVYTPEVFR LFEKEYMGIL NCSVYKIGKS GTTSEYKVSY 540 RSHEHLVKYD GSTQAVNCSC MKFTFVGILC SHALKVLDKK NVKTIPPDYI LKRWTRGARD 600 RSLTSYHGIE TSNNPRESPG KHYSHLCHNF REIASLAAED ERLTACAQDW SVQLLKSLEE 660 MKKNLGLDNV PVHKNSEGKA LVGESGGTKQ VKMVKHNDCE ITKERGVKRK YTAKCPCSRL 720 TEPAETQKHI PPTKGTQYAA RHWLLEVLVP KFIE* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr006864.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009350482.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | R0EZH3 | 0.0 | R0EZH3_9BRAS; Uncharacterized protein | ||||
STRING | XP_009350481.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-123 | FAR1-related sequence 5 |