PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr006811.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 342aa MW: 37375.7 Da PI: 8.6932 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.2 | 6.8e-24 | 76 | 120 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk +e+ Pbr006811.1 76 DPEPGRCRRTDGKKWRCSKDAYQDSKYCERHMNRGRNRSRKLVES 120 79***************************************9986 PP | |||||||
2 | QLQ | 51.9 | 2.3e-18 | 14 | 48 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FT aQ++++++Q+l++KyL a++PvP+eLl++i+ Pbr006811.1 14 LFTVAQWAEMEHQALIFKYLKAGVPVPSELLAPIR 48 6********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.5E-9 | 13 | 49 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.498 | 14 | 49 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-12 | 15 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.458 | 76 | 120 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.5E-20 | 77 | 119 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MSGSSVGTGG HAPLFTVAQW AEMEHQALIF KYLKAGVPVP SELLAPIRTS FNLISPNFLP 60 HHPTWGYASY CGKKIDPEPG RCRRTDGKKW RCSKDAYQDS KYCERHMNRG RNRSRKLVES 120 QTASQSLSTV TSDSVIGSSS HGGSFQTMPL HSIGNSGGLC FGGNGSELKM EAIPYGVSNR 180 GARGCNRSGS EEHNFMSEAK RCVQAHSTVD SPWRLMEPQV PLKSELRNSS LWLNNSSQLQ 240 TLQTMESLSG AAAITKQEYV GGEFGLPGSQ KHEQNSLQPL FDEWPKSRDL GFHLNDHRSN 300 TTELSMSNAG ATPKYCTRSD ESPNGTLFSS RTSCRCPPPS P* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr006811.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009365741.1 | 0.0 | PREDICTED: growth-regulating factor 4-like | ||||
TrEMBL | A0A498JUK8 | 0.0 | A0A498JUK8_MALDO; Uncharacterized protein | ||||
STRING | XP_009365741.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4781 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-41 | growth-regulating factor 5 |