PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr006791.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

BES1

Protein Properties

Length: 718aa MW: 80239.7 Da PI: 6.4786

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr006791.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	142.3	4.3e-44	94	229	2	143
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslk 99 +g+++++kE+E++k+RER RR i+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve+DGttyr+ p+++++aa +s s++ s++ Pbr006791.1 94 NKGKREREKEKERTKLRERLRRSITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEPDGTTYRH-APPPSQMAAAYQSPMG--MRSVE-SPV 187 5799*****************************************************************4.4444466666666552..22333.456 PP DUF822 100 ssalaspvesysaspksssfpspssldsislasaasllpvlsvl 143 ss +++ +s+ + + ++++sp+slds+ +a+ ++ ++ + Pbr006791.1 188 SSGVKATNPSS--MARIDESLSPASLDSVVIAERDTTATATATV 229 67777766655..5566788999999999999874444433333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.6E-43	95	225	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.20.20.80	2.9E-171	269	702	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	4.92E-159	269	704	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01373	2.5E-82	292	662	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-55	305	319	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-55	326	344	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-55	348	369	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-55	441	463	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-55	514	533	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-55	548	564	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-55	565	576	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-55	583	606	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-55	620	642	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MNDDDSLHHD LDPQSDHSSD YLPHPHPHHS SHPIQPQQSH PQPQPQPRRP RGFAAXXXXX 60 XXXXXXXXXR PGASPATAAG SAGPTSPSST PTTNKGKRER EKEKERTKLR ERLRRSITSR 120 MLAGLRQYGN FPLPARADMN DVLAALAREA GWVVEPDGTT YRHAPPPSQM AAAYQSPMGM 180 RSVESPVSSG VKATNPSSMA RIDESLSPAS LDSVVIAERD TTATATATVT AATNKSVECL 240 EMEAGDQLMH HLSNSISSGD HGIPTTALAY VPLYAALATG FINSYCQLVD PEGLRQELAH 300 VQSLNIDGVV VDCWWGIVEG WSPQKYVWSG YRALFNIVRE FKLKLQVVMA FHEYGRSDSG 360 DALIPLPQWI LEIGKKNPDI FFTDREGRRN TECLSLGIDK ERVLQGRTGV EVYFDFMRSF 420 RTEFDDLFAE GLISAVEIGL GASGELKYPS FSERMGWRYP GIGEFQCYDK YLQESLQRAA 480 KLRGHSFWAR GPENAGEYNS RPHETGFFCE RGDYDSYYGR FFLHWYAQSL IDHADSVLSL 540 ASLAFDETKL IVKVPSVFWW YKTTSHAAEL TSGYYNPTNQ DGYSPVLEVL KKHLATVKFV 600 CSGPHISIQD NEALADPEGL SWQVLNLAWD RGLTVAGENA LSCYDREGCM RIVEMVKPRN 660 DPDHHHFSFF VYQQPSPLVQ GTICFPELDF FIKCMHGKYS HTAMRDLVRK IQFGGVS*

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MNDDDSLHHD LDPQSDHSSD YLPHPHPHHS SHPIQPQQSH PQPQPQPRRP RGFAAXXXXX  60
XXXXXXXXXR PGASPATAAG SAGPTSPSST PTTNKGKRER EKEKERTKLR ERLRRSITSR  120
MLAGLRQYGN FPLPARADMN DVLAALAREA GWVVEPDGTT YRHAPPPSQM AAAYQSPMGM  180
RSVESPVSSG VKATNPSSMA RIDESLSPAS LDSVVIAERD TTATATATVT AATNKSVECL  240
EMEAGDQLMH HLSNSISSGD HGIPTTALAY VPLYAALATG FINSYCQLVD PEGLRQELAH  300
VQSLNIDGVV VDCWWGIVEG WSPQKYVWSG YRALFNIVRE FKLKLQVVMA FHEYGRSDSG  360
DALIPLPQWI LEIGKKNPDI FFTDREGRRN TECLSLGIDK ERVLQGRTGV EVYFDFMRSF  420
RTEFDDLFAE GLISAVEIGL GASGELKYPS FSERMGWRYP GIGEFQCYDK YLQESLQRAA  480
KLRGHSFWAR GPENAGEYNS RPHETGFFCE RGDYDSYYGR FFLHWYAQSL IDHADSVLSL  540
ASLAFDETKL IVKVPSVFWW YKTTSHAAEL TSGYYNPTNQ DGYSPVLEVL KKHLATVKFV  600
CSGPHISIQD NEALADPEGL SWQVLNLAWD RGLTVAGENA LSCYDREGCM RIVEMVKPRN  660
DPDHHHFSFF VYQQPSPLVQ GTICFPELDF FIKCMHGKYS HTAMRDLVRK IQFGGVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-122	268	659	9	401	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr006791.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018505014.1	0.0	PREDICTED: beta-amylase 8, partial
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A498JSP1	0.0	A0A498JSP1_MALDO; Beta-amylase
STRING	XP_008373437.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11902	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]