PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr006773.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | WOX | ||||||||
Protein Properties | Length: 243aa MW: 27760.2 Da PI: 4.6982 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 108 | 168 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ ql++Le+ Fe+ n +p +++++eL+++l +++e++V++WFqNrRa+ k+ Pbr006773.2 108 RQRWTPSAVQLQILEQIFEEgNGTPCKQKIKELTMELtqhgQISETNVYNWFQNRRARSKR 168 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 95.9 | 3.3e-31 | 107 | 170 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP++ Q++iLe+++++G tP k++i+++t+eL+++G+i+++NV++WFQNr+aR+++kq Pbr006773.2 107 SRQRWTPSAVQLQILEQIFEEGNGTPCKQKIKELTMELTQHGQISETNVYNWFQNRRARSKRKQ 170 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 102 | 174 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.738 | 104 | 169 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-13 | 106 | 173 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-18 | 106 | 172 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.96E-12 | 108 | 170 | No hit | No description |
Pfam | PF00046 | 2.1E-18 | 108 | 168 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MMGEWQQQQM IHQNLQNPEE DDGIGNGNGG LFVKVMTDEQ MEQLRQQIAV YTTICDQLVD 60 LHKQLSAQQD LTGRSAPLSL IQSQLGMRLG NFYCDPFMAS GGHKITSRQR WTPSAVQLQI 120 LEQIFEEGNG TPCKQKIKEL TMELTQHGQI SETNVYNWFQ NRRARSKRKQ SMTTQNNAES 180 EAEPEVESPR DEKTKPEDIL SFDNSALRAE NMYLQSPELG TELFSWMHCL IEIRNLECTS 240 ML* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 169 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr006773.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009365700.1 | 1e-141 | PREDICTED: WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 5e-71 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A498JSL3 | 1e-127 | A0A498JSL3_MALDO; Uncharacterized protein | ||||
STRING | XP_009365700.1 | 1e-140 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 5e-63 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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