PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr006641.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 381aa MW: 41885 Da PI: 7.6332 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 100.5 | 3.1e-31 | 56 | 178 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa............seceaesssssasnsss 87 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl +ak++i+el+ ++ +++ + ss++ +s+ Pbr006641.1 56 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQERLGLNQPSKVVDWLLDAAKHEIDELPPLPMPPSgsfglnhpslglT--------SSHGDQSN 145 689*************************************************************888884333322222110........11111111 PP TCP 88 g...............................k 89 + + Pbr006641.1 146 AhaqlshnhsgegprsaidrsnfwptgsdalwR 178 111111112222233333333333333333331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.5E-28 | 58 | 170 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.47 | 58 | 116 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MIKSPISEAD LQEAGAGSSS RDDQANKISS NPNLSRPSTP WLRLKDPRIV RVSRAFGGKD 60 RHSKVCTIRG LRDRRVRLSV PTAIQLYDLQ ERLGLNQPSK VVDWLLDAAK HEIDELPPLP 120 MPPSGSFGLN HPSLGLTSSH GDQSNAHAQL SHNHSGEGPR SAIDRSNFWP TGSDALWRAK 180 SKEIVRDTRN EDEGNQKDNL GISDDQEQAG NNVDGNSSNT FLRSNTNPPF FPGLLNSSTN 240 MPYAYHNWDH SHQTSNFPLS QLGSHGFQSE TTDLHNFRNV LSLPSTLSLS TTQSYFPSHN 300 TAATGEMDPR QFNHLQMLNS SSSTRTSQNL LPNFLSTPAL YPSSQTLRAP HLSMVTKLVH 360 SSDNTGSGHH PNNNQEPPSR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-17 | 63 | 117 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-17 | 63 | 117 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr006641.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM501067 | 0.0 | KM501067.1 Malus domestica TCP domain-containing protein 13 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009350418.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
Refseq | XP_009350419.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
Refseq | XP_009350420.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
Refseq | XP_009350421.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
TrEMBL | A0A498HII4 | 0.0 | A0A498HII4_MALDO; Uncharacterized protein | ||||
STRING | XP_009350418.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 1e-49 | plastid transcription factor 1 |