PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006544.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 260aa    MW: 29200.2 Da    PI: 5.8298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006544.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23.1e-1362113155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+++P++   + ++ + a+i   A++++k+L+
  Pbr006544.1  62 QRMTHIAVERNRRKQMNEYLSVLRSIMPES---YVQRGDQASIIGGAINFVKELE 113
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.1E-1460117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.30E-1260117No hitNo description
PROSITE profilePS5088815.11661112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1661134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1062113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-967118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVSHFSELHL SNPNPVGSTI NPAGDQPEFQ LPLEDTINVS SGTRAKRRRA KSKKNEEEIE  60
NQRMTHIAVE RNRRKQMNEY LSVLRSIMPE SYVQRGDQAS IIGGAINFVK ELEQEVQFLG  120
VQKPNNRAPF SEFFTFPQYS TRSTSDHEST VATMAELPLL ECRSSNIAAD IEVTMVESHA  180
SLKVRSKRLP KQLLKIVSGL HDMHLTVLHL NVVTADDIVL YSLSLKVEDE CMLTSVDEIA  240
TAVHEMLARI QEEAMLDLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16273RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006544.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018498341.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T42e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A498K1460.0A0A498K146_MALDO; Uncharacterized protein
TrEMBLD9ZIP70.0D9ZIP7_MALDO; BHLH domain class transcription factor
STRINGXP_009335628.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]