PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr006477.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 384aa MW: 42095.5 Da PI: 8.5136

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr006477.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	100.1	3.9e-31	56	197	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec....eaesssssasnsssgk 89 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl +ak++i+el+ ++ +++ + +++++ +++++++ ++ Pbr006477.1 56 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQEKLGLNQPSKVVDWLLDAAKHEIDELPPLPMPPPgtfglnH-PslvlTSSHDDQTNAHPQLSH 152 689*************************************************************888884443321.122332222233333344445 PP TCP 90 aaksaakskksqksaasalnlakesrakararare.rtrekmrik 133 + + + +s+ ++s+ nl++ rak+++ ar r++e+ ++ Pbr006477.1 153 NDRGEGPSSGIDRSNVWPTNLDALWRAKSKEIARHtRNEEEEGKR 197 555555666666666666777777789999999986666655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	30.037	58	116	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.5E-28	58	182	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MIKSLVSEAD LKEAGAGSAS RDEQANKISS NPNLSRSSTP WPRLKDPRIV RVSRAFGGKD 60 RHSKVCTIRG LRDRRVRLSV PTAIQLYDLQ EKLGLNQPSK VVDWLLDAAK HEIDELPPLP 120 MPPPGTFGLN HPSLVLTSSH DDQTNAHPQL SHNDRGEGPS SGIDRSNVWP TNLDALWRAK 180 SKEIARHTRN EEEEGKRKDN LGISDDQKQA GNNIDGNSSN TFLTRGSTTN PPFFPGLLNS 240 STNMPYDYQN WDHPHQTSSF PLSQLGSHGF QSQTTDLHNF LNVLSLPSTL SLSTTQSYFP 300 SHNAAATGEI DPRQFNHLQL LNSSSSTSTS QNLLPNSLST PALYPSSQTL RAPHLSMVTK 360 LVHSSNNTGS GHQPNNDQGP LHR*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MIKSLVSEAD LKEAGAGSAS RDEQANKISS NPNLSRSSTP WPRLKDPRIV RVSRAFGGKD  60
RHSKVCTIRG LRDRRVRLSV PTAIQLYDLQ EKLGLNQPSK VVDWLLDAAK HEIDELPPLP  120
MPPPGTFGLN HPSLVLTSSH DDQTNAHPQL SHNDRGEGPS SGIDRSNVWP TNLDALWRAK  180
SKEIARHTRN EEEEGKRKDN LGISDDQKQA GNNIDGNSSN TFLTRGSTTN PPFFPGLLNS  240
STNMPYDYQN WDHPHQTSSF PLSQLGSHGF QSQTTDLHNF LNVLSLPSTL SLSTTQSYFP  300
SHNAAATGEI DPRQFNHLQL LNSSSSTSTS QNLLPNSLST PALYPSSQTL RAPHLSMVTK  360
LVHSSNNTGS GHQPNNDQGP LHR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-17	63	117	1	55	Putative transcription factor PCF6
5zkt_B	6e-17	63	117	1	55	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr006477.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM501067	0.0	KM501067.1 Malus domestica TCP domain-containing protein 13 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009365917.1	0.0	PREDICTED: transcription factor TCP13-like
TrEMBL	A0A498J3C3	0.0	A0A498J3C3_MALDO; Uncharacterized protein
STRING	XP_009365917.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF932	34	119

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	6e-42	plastid transcription factor 1