PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006319.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 326aa    MW: 36174.5 Da    PI: 6.5146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006319.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.4e-13116167155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N  ++ Lr+++P +   ++++ + a+i   A++++k+L+
  Pbr006319.1 116 QRMTHIAVERNRRKQMNVYLAVLRSMMPAP---YAQRGDQASIIGGAINFVKELE 167
                  79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.82E-11114171No hitNo description
Gene3DG3DSA:4.10.280.102.4E-12115171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15115188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-9121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MTLGAVVFQE EQYSYGWKDS QAIGGGGGGG GSWSHGFDFG EEDHQEESNE VGQQGFNMSL  60
DSSPSSMVQS VNDSDTNNGS AFNHVFPSIE ALAATTGRKK RKRIRSIKNK EVMETQRMTH  120
IAVERNRRKQ MNVYLAVLRS MMPAPYAQRG DQASIIGGAI NFVKELEQLL QSIEGQRRTK  180
QQSDHHLNFA SIFSSFFAFP QYSTCSTNHG HGLYNNSSME LSNELTAEKR SSAIADVEVS  240
MAESHANIKV LVKKQPRQLL NMVLGLHSLR LMILHLNVTT VDSMIFYSFS VKIEDNSQLT  300
SVNEIAADVY EMVGRIQEEA QHLAQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102RKKRKR
2116127RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006319.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365813.20.0PREDICTED: transcription factor bHLH94-like
TrEMBLA0A498KK450.0A0A498KK45_MALDO; Uncharacterized protein
STRINGXP_009365813.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-64bHLH family protein