PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr006223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Dof | ||||||||
Protein Properties | Length: 254aa MW: 26835.7 Da PI: 6.6108 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.1 | 2.2e-39 | 29 | 89 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWt+GG+lrnvPvGgg+rkn k+s Pbr006223.1 29 QTEPLHCPRCDSDNTKFCYYNNYNLAQPRHFCKSCRRYWTHGGTLRNVPVGGGSRKNTKRS 89 57889****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-24 | 26 | 87 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-33 | 32 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.245 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 35 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MPFDSADAQM RPSTTMRVQH SLGHPPPQQT EPLHCPRCDS DNTKFCYYNN YNLAQPRHFC 60 KSCRRYWTHG GTLRNVPVGG GSRKNTKRSR PSCSSSSGSP SSSSLTQEVS SVAPTKPISL 120 PVEPKPETAL DHEKLMDLNE SAVGNGGFTS LLSAQGPPAP GFLALGGFGY GFGYGLGLGQ 180 GLDEVGTFGY GGGRGVLGFP EEGDFANINH NNNGAVSGGS VGCNTWQIMT GGDGRIAEDN 240 GDCFTWPELE ISK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr006223.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354149 | 8e-34 | AK354149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1005F20. | |||
GenBank | AK360934 | 8e-34 | AK360934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128K17. | |||
GenBank | AK377058 | 8e-34 | AK377058.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3146P05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009365647.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
TrEMBL | D9ZIY4 | 1e-146 | D9ZIY4_MALDO; DOF domain class transcription factor | ||||
STRING | XP_009365647.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2801 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 1e-32 | Dof family protein |