PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr006217.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 969aa MW: 108622 Da PI: 9.9295 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.3 | 6.8e-14 | 9 | 89 | 12 | 89 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE......EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr......yvltkGWkeFvkangLkegDfvvFkldgrse 89 +++ +++p +fa+e+g+ + + +l+l+d++gr W v l ++++ + + tkGW +F +n Lkeg++++Fkl++ ++ Pbr006217.1 9 SKAYVTIPARFARENGLHSIS--KLILNDPRGRLWPVSLGRWGSRVKavdhrlAINTKGWYKFYASNSLKEGEVCLFKLKR-MS 89 567799*********998544..8***************665555555554455556*********************976.44 PP | |||||||
2 | B3 | 52.1 | 1.1e-16 | 170 | 255 | 8 | 99 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 s l+s rl +p +f+++++g + s + l +sg W+v+l ++ g+ +l GW Fv+++ ++ gDf+vF++d + +f +v +f++ Pbr006217.1 170 SADLSSERLKIPDRFMRHMEGRT--SGLVLLFGPSGSAWSVEL--IQQNGGLFLHHGWPAFVRDHYVECGDFLVFSYDADLCF--TVLIFDQ 255 56788999********8888884..4489999***********..888889**************************999999..9999987 PP | |||||||
3 | B3 | 43.4 | 6.2e-14 | 399 | 478 | 14 | 96 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 l +p kf +h ++++++++l++ +g+sW+v+ ++ +++l +GW Fv+ n+++ gD+++F+l+++ ef +v++ Pbr006217.1 399 YTLNIPYKFSVAHL--PNCKVKIVLQNWKGESWTVNSVPsTRVHTSHTLCGGWMAFVRCNDIQLGDICIFELVRECEF--RVHI 478 4689*****99996..45999***************9445555667999************************99999..4544 PP | |||||||
4 | B3 | 41.3 | 2.7e-13 | 605 | 697 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k++++ + + s l +p +f +e+ + ++++ l++++g W+v+ + k++ +++ +GW Fv+ n+++ gD+++F+l+g++e + v+ Pbr006217.1 605 FVKIMKKFNISGSYTLKVPYQFSTEYlpN----YKTEILLRNSKGGCWTVNSVPDSKGRVvHTFCGGWMAFVRGNDINFGDVCIFELVGKDE--MQVH 696 6777877788888899**********533....4468***************5544444379999**********************98544..4555 PP E CS B3 96 v 96 + Pbr006217.1 697 I 697 5 PP | |||||||
5 | B3 | 58 | 1.8e-18 | 726 | 806 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ l++p f++++gg + ++ tl+++sg W vkl ++k ++ +++kGWk Fvk++ L+ gDf+vF++ g sef v++f++ Pbr006217.1 726 SKH-LRIPSAFIKNFGGR--SLRKCTLRNPSGDCWGVKL--KQKEDGLFFRKGWKVFVKDHFLEHGDFLVFEYRGGSEF--DVTIFDR 806 444.9*******999988..5568***************..9*******************************988888..9999997 PP | |||||||
6 | B3 | 38.7 | 1.8e-12 | 864 | 956 | 7 | 98 |
.-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 7 psdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +++++l++pk+ a + g++ + t+tl+d++grsW +l + + + r+ +++GW vka ++ gD +v+++++ ++ l +++fr Pbr006217.1 864 TLKKFNRNILTIPKHVAIAEglvsdaGLP--SRETVTLQDPTGRSWLAQL-HVRADHRVQMARGWAACVKATEISPGDDIVLEFVK--RGVLQLHIFR 956 35789999********9888888886666..4459***************.56666789999*********************876..4555888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.449 | 1 | 100 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0022 | 4 | 93 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-13 | 5 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.30E-11 | 7 | 87 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-14 | 8 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.7E-11 | 8 | 88 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.87E-22 | 160 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-21 | 161 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.93 | 163 | 256 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.22E-17 | 163 | 254 | No hit | No description |
SMART | SM01019 | 4.8E-11 | 165 | 256 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-15 | 170 | 255 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-21 | 379 | 480 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-23 | 379 | 479 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.83E-17 | 384 | 478 | No hit | No description |
PROSITE profile | PS50863 | 13.155 | 386 | 482 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-11 | 386 | 482 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.4E-11 | 399 | 478 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-20 | 597 | 698 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.04E-21 | 598 | 699 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.78E-16 | 603 | 697 | No hit | No description |
PROSITE profile | PS50863 | 12.506 | 605 | 701 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-11 | 605 | 703 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-10 | 605 | 697 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.551 | 714 | 807 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.3E-22 | 715 | 812 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.9E-16 | 716 | 807 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-23 | 719 | 809 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.30E-18 | 725 | 805 | No hit | No description |
Pfam | PF02362 | 9.5E-16 | 726 | 806 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.24E-15 | 854 | 957 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-14 | 854 | 957 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.307 | 858 | 958 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.55E-9 | 861 | 956 | No hit | No description |
SMART | SM01019 | 3.5E-9 | 861 | 958 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-10 | 864 | 957 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 969 aa Download sequence Send to blast |
MAKTHGCVSK AYVTIPARFA RENGLHSISK LILNDPRGRL WPVSLGRWGS RVKAVDHRLA 60 INTKGWYKFY ASNSLKEGEV CLFKLKRMSR SISTAFMDVE ITPRRSESAV DFSEIQWYVA 120 LSVRDLAQSR ATRRRETTPH VLQRAPGAKL ISMAKEARNV RSPHFFAFYS ADLSSERLKI 180 PDRFMRHMEG RTSGLVLLFG PSGSAWSVEL IQQNGGLFLH HGWPAFVRDH YVECGDFLVF 240 SYDADLCFTV LIFDQSACEK EAAFRFGYGQ DSSNFEKCKY VGRKRGREEA ASSGYKLVDG 300 AAKKVRNGLS QLQSECIDEG REDATCSKET NPHEKPGLDV VPNTAKASIQ NMCGIGDGLN 360 VSGRVCMQMS SAHEVAPVFS SSNPYFVRII KSFNISGSYT LNIPYKFSVA HLPNCKVKIV 420 LQNWKGESWT VNSVPSTRVH TSHTLCGGWM AFVRCNDIQL GDICIFELVR ECEFRVHIQK 480 GETSSWLSPG QAVTTHKTIK GLSKKIKGNS PKVHSKSIRE IADKLSSKMY QDPAFVNDTR 540 KYGSTSRSLT KVALSQSKVA SKKLVNRRKK VVEDELDSQK RGLRIKLTLD EERVARSFTS 600 CFPNFVKIMK KFNISGSYTL KVPYQFSTEY LPNYKTEILL RNSKGGCWTV NSVPDSKGRV 660 VHTFCGGWMA FVRGNDINFG DVCIFELVGK DEMQVHISGV GANMDEKLKE PLVTPAFRAL 720 LVGDFSKHLR IPSAFIKNFG GRSLRKCTLR NPSGDCWGVK LKQKEDGLFF RKGWKVFVKD 780 HFLEHGDFLV FEYRGGSEFD VTIFDRTCCE KNVEEAARRA SSNLADSRTV DDVVRIERPA 840 SVHLAETSTG SVLFKSENTW FTKTLKKFNR NILTIPKHVA IAEGLVSDAG LPSRETVTLQ 900 DPTGRSWLAQ LHVRADHRVQ MARGWAACVK ATEISPGDDI VLEFVKRGVL QLHIFRGNVL 960 LTSPDVSD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr006217.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009365640.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like | ||||
TrEMBL | A0A498J6W4 | 0.0 | A0A498J6W4_MALDO; Uncharacterized protein | ||||
STRING | XP_009365640.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11470 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 3e-18 | B3 family protein |