PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005984.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 717aa    MW: 76555.1 Da    PI: 6.5539
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005984.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.4e-16460506455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  Er+RRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Pbr005984.1 460 VHNLSERKRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 506
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.72E-17452510No hitNo description
SuperFamilySSF474598.64E-21453519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.216456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-13460506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-20460514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-17462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MPLSELYRMA GRVDSSQDFE NDFLELVWEN GQVMMQGQSS RTRKNPSFNS LPSFSNPKNR  60
DRDVGNGNIG KTGKFGSVVD SGLDEIPLSV PSSEMGLSED DDMLPWLNYS IDEPLHHEYC  120
HDFLPEFSSA TANEASTNHN LASIDKRSSS SQVFRDSNSN SAHEGACLQQ RNVGKVPLNG  180
GADVSRPRSG ATQLYSLSSQ RSQASFPSFR SRVSDTAGDN TSSATHRGVG KNSTHISSAG  240
GSPGMKIPRP DPVTPSNNNP SIVNFSHFSR PAALAKANVQ TNGVMAGSGS SSMIRIANKD  300
KFSSATSNSL PESMLIDSSS SAPKESNSQC QQILVRSSVE LKPTEAKHLE EPCTAKRSEG  360
TCQEETSKND INSNHIPCES AVRVSPNGEK TVEPVVASSV CSGNSVERGS DDPTQALKRK  420
FRETDESECH SDDVEEEYMG VKKGAHARGM GSKRSRAAEV HNLSERKRRD RINEKMRALQ  480
ELIPNCNKVD KASMLDEAIE YLKTLQLQLQ MMSMGAGMYM PPMMLPPGMQ HMHGPCMAHF  540
SPMGVGMGMG MGMGLGMGFG MGMPDMIGAS SSYPMLQVPP MQGAHFPGSH MAGHTAFNGM  600
MGSNLQMFGL PSQGVPVPMQ RAPLAPSSAG PFVKSSGGLN ASSSGGPVEN VESAPVSGSK  660
DSVQNMNSQA MQNSNANSSM NQTSSQGQAT NEGFAQSALV RNNVQATDVN NNRADG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464469ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005984.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9878740.0JN987874.1 Malus x domestica phytochrome-interacting factor 3 (PIF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335548.10.0PREDICTED: transcription factor PIF3-like isoform X1
RefseqXP_009365453.10.0PREDICTED: transcription factor PIF3-like isoform X1
TrEMBLA0A498IIU90.0A0A498IIU9_MALDO; Uncharacterized protein
STRINGXP_009335548.10.0(Pyrus x bretschneideri)
STRINGXP_009365453.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-54phytochrome interacting factor 3