PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005947.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ZF-HD
Protein Properties Length: 352aa    MW: 37579.7 Da    PI: 7.0473
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005947.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.37.8e-33119175360
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                   vrY+eClkNhAa++Gg+++DGCgEfmps geegta+alkCaAC+CHRnFHR+ev+ e
  Pbr005947.1 119 VVRYRECLKNHAANIGGNVFDGCGEFMPS-GEEGTAEALKCAACDCHRNFHRKEVDGE 175
                  69**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-23119173IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.4E-30120172IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.2E-30121172IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.891122171IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.7E-29256318IPR009057Homeodomain-like
SuperFamilySSF466891.9E-18256318IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-27257314IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDFRAQDNEM RTSGSLSYAH LSTKESSPSS AAAAPAADHQ QKRRLGIHNG TGSYGSATAP  60
HHQHQTLDNH NPAALPLQQL IREPDPDRAL SGTPVAPHGA GLSGSGGGGG GGPKSLGKVV  120
RYRECLKNHA ANIGGNVFDG CGEFMPSGEE GTAEALKCAA CDCHRNFHRK EVDGETAAFS  180
PASRRSSIML TPLQLPPPLP SSSALHHHHH HHQKYSMPPI VQPVNVAFGS GGGGTESSSE  240
DLNAFEGGAV PPFALSKKRF RTKFTVEQKE RMMEFAERVE WRIQKQDEEE VERFCAEVGV  300
KRQVLRVWMH NNKNTIKKQG DVTATTNAIA TGLSFDNVEG EGGEGAAAAE D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-242563151675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005947.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336904.10.0PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotQ9FRL59e-68ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A498HNU60.0A0A498HNU6_MALDO; Uncharacterized protein
STRINGXP_009336904.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.11e-61homeobox protein 33