PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr005918.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 456aa MW: 49340.9 Da PI: 6.9891

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr005918.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.5e-05	336	374	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Pbr005918.1 336 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 374 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.522	324	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.22E-5	334	378	No hit	No description
SuperFamily	SSF47459	9.95E-11	334	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-9	338	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MESANFHHQQ HHQLQENLVG SSSLAATTPS CYAVGTKPAW TPTTTLSSSG NSLPNSSLDT 60 LNSSLVPELG FHWLTNITSD HQSAHDLVYI KEELSSSSSL DHHSSFPKLT EMLTAATSSS 120 SIDHDQYFQF IKNEQEDQMI MNDLSEKLLL KTLSSRCQMN STINSQHHQI PPSARDHHQF 180 YSNDHHHLLH NSNLMGGVPL AMPSRSAGHF SQIYPSINVS NLNRSLSSST LSSSSLDMNL 240 QAMDLLGASA RFSTGDSSSF STTPTNSHDA LGLYNERHNS FGTLEQMQQG KVSSFDNEMT 300 EVKRPGSLIE PKATQAAAPK KSRLESRTSC PPFKVRKEKL GDRIAALQQL VAPFGKTDTA 360 SVLMEAIGYI KFLQNQVETL SVPYMKSSRN KTSKTILQGG MAEINGNGET KRDLISRGLC 420 LVPLSCMSYV TGDVGGGGGS GSGSLWSTPN FGGGT*

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MESANFHHQQ HHQLQENLVG SSSLAATTPS CYAVGTKPAW TPTTTLSSSG NSLPNSSLDT  60
LNSSLVPELG FHWLTNITSD HQSAHDLVYI KEELSSSSSL DHHSSFPKLT EMLTAATSSS  120
SIDHDQYFQF IKNEQEDQMI MNDLSEKLLL KTLSSRCQMN STINSQHHQI PPSARDHHQF  180
YSNDHHHLLH NSNLMGGVPL AMPSRSAGHF SQIYPSINVS NLNRSLSSST LSSSSLDMNL  240
QAMDLLGASA RFSTGDSSSF STTPTNSHDA LGLYNERHNS FGTLEQMQQG KVSSFDNEMT  300
EVKRPGSLIE PKATQAAAPK KSRLESRTSC PPFKVRKEKL GDRIAALQQL VAPFGKTDTA  360
SVLMEAIGYI KFLQNQVETL SVPYMKSSRN KTSKTILQGG MAEINGNGET KRDLISRGLC  420
LVPLSCMSYV TGDVGGGGGS GSGSLWSTPN FGGGT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr005918.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009335970.1	0.0	PREDICTED: transcription factor bHLH110
Refseq	XP_009335979.1	0.0	PREDICTED: transcription factor bHLH110
TrEMBL	A0A498HSI7	0.0	A0A498HSI7_MALDO; Uncharacterized protein
STRING	XP_009335970.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	6e-55	bHLH family protein