PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005910.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 440aa    MW: 48505.6 Da    PI: 6.3778
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005910.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-093623991954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +e+  LA+++gL+++qV++WF N R +
  Pbr005910.1 362 FEHflHPYPNDNEKLLLASQTGLSKNQVSNWFINARVR 399
                  564459******************************88 PP
2BELL98.55.3e-32225295272
         BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  ++e+q++ a L++lle+V++r ++y++q+++v+ssFe+v+g g+ak+Yt+lAlka+SrhF +L+d i+++i
  Pbr005910.1 225 KHEMQARLANLITLLEQVEDRCEKYYHQMEQVMSSFEMVVGEGAAKSYTALALKAMSRHFCSLRDGIVSHI 295
                  79******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-33154293IPR006563POX domain
PfamPF075261.7E-39159291IPR006563POX domain
PROSITE profilePS5007111.774340403IPR001356Homeobox domain
SMARTSM003897.1E-8343407IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-26348409IPR009057Homeodomain-like
CDDcd000863.65E-11349404No hitNo description
SuperFamilySSF466895.13E-17349410IPR009057Homeodomain-like
PfamPF059201.4E-16360399IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MVSQDSPPNP SSSIFHQFII SDSISAQNHH LESQHLDAYP PAFQTSTTFP QALGVLPSIH  60
SLGERMSRSV GLVQAPTGAA MENQVQRLSL SLGSHLLVPS GQYRHHNFHT GEESGEACNQ  120
GVEHVGDEYC FMEGTLASHS SALNRSCSTS YGAESLAAVI ANSKYLKPAQ SLLEEIVNVG  180
GQLVDISNEK HVGKLYGEGR RGGMGLSSEL RAELSCNGGL MNADKHEMQA RLANLITLLE  240
QVEDRCEKYY HQMEQVMSSF EMVVGEGAAK SYTALALKAM SRHFCSLRDG IVSHIYAEKR  300
KLLQDVPKIS GGLSQLNLFD RECRHKRMSL QQLGIFQSQR QAFRPIRGLP ETSVAILRTW  360
LFEHFLHPYP NDNEKLLLAS QTGLSKNQVS NWFINARVRL WKPMIEEMYK EELGESSEDS  420
NSLAGGSLTG EGNTDPTEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16349406158Homeobox protein Meis1
4xrs_B4e-16349406158Homeobox protein Meis1
5bng_A4e-16349407159Homeobox protein Meis2
5bng_B4e-16349407159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272530.0AB627253.1 Malus x domestica mRNA, microsatellite: MEST101, clone: LEF01_08_A08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335838.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-101BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A498HWF90.0A0A498HWF9_MALDO; Uncharacterized protein
STRINGXP_009335838.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-103BEL1-like homeodomain 11