PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr005893.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ERF | ||||||||
Protein Properties | Length: 171aa MW: 18586 Da PI: 9.9148 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.5e-19 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f t +eAa a++aa++kl+g Pbr005893.1 45 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATSYEAALAYDAAARKLYG 94 69****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.45E-21 | 44 | 104 | No hit | No description |
PROSITE profile | PS51032 | 21.641 | 45 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 45 | 103 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-34 | 45 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-13 | 45 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-30 | 45 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-9 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-9 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSTSEMSGGS SSVGVAEKPA KRPVQGSSRK GCMKGKGGPE NAMCTYKGVR QRTWGKWVAE 60 IREPNRGARL WLGTFATSYE AALAYDAAAR KLYGSKAKLN LPDQQAPNYR HRQLNQHLQH 120 QVFPSSANPG VPPQIPNQTL VQNNPSGTGT NPACYIRCCC ERYCSTCYSQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-18 | 46 | 102 | 6 | 63 | ATERF1 |
3gcc_A | 3e-18 | 46 | 102 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr005893.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009336823.1 | 1e-104 | PREDICTED: dehydration-responsive element-binding protein 2D-like | ||||
Swissprot | Q9LQZ2 | 2e-45 | DRE2D_ARATH; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A498J8W4 | 1e-80 | A0A498J8W4_MALDO; Uncharacterized protein | ||||
STRING | XP_009336823.1 | 1e-103 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 2e-38 | ERF family protein |
Publications ? help Back to Top | |||
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