PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005887.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SRS
Protein Properties Length: 358aa    MW: 38264.9 Da    PI: 7.9576
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005887.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.31.9e-681222693153
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100
                   g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerq+q +a+++++++++ ++ + r ++ k ++ ++l++ +++s +s   l
  Pbr005887.1 122 GGGINCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQEQFSALQQNRNQQQ-QQIQFRGENPKRQRDNSLACVRIPSDTSG--L 216
                  5789**************************************************99988887655.44555555556889999*******99866..8 PP

       DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                  e + +P+evss+avfrcv+vs++dd +e++aYqtav+igGhvfkG+LydqG++
  Pbr005887.1 217 ELNPFPPEVSSPAVFRCVKVSAMDDVDEQFAYQTAVNIGGHVFKGLLYDQGID 269
                  8899***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.8E-66124269IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-26126168IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.2E-26221268IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAGFFCLGGR DRSPNSRGKQ EGENQSGRVG GVAAEAAAGG GGGNLFLYRS TGEAQAEIYN  60
KGFEIWPSQY HPHQNLNYYS FGVDPSYNRR HLDNNNDGVS ADDLSAGLRL TVMRGGGLGS  120
SGGGINCQDC GNQAKKDCPH LRCRTCCKSR GFQCQTHVKS TWVPAAKRRE RQEQFSALQQ  180
NRNQQQQQIQ FRGENPKRQR DNSLACVRIP SDTSGLELNP FPPEVSSPAV FRCVKVSAMD  240
DVDEQFAYQT AVNIGGHVFK GLLYDQGIDG QYYPSSGGGG ESSSGGQGTS HDHHHDGGGS  300
GGGRGHPHHH QQHNLVTVAA AGGTSGNPST TLLDPSLFPA PLNAFMAGTQ YFPPPRS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00152DAPTransfer from AT1G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335611.10.0PREDICTED: protein SHI RELATED SEQUENCE 1 isoform X1
TrEMBLA0A498HUT30.0A0A498HUT3_MALDO; Uncharacterized protein
STRINGXP_009335611.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.16e-72SHI-related sequence 5