PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr005862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 341aa MW: 38085 Da PI: 9.7598 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 395 | 1e-120 | 1 | 340 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensl 91 mdd g+re r+k+ +y+ a + l +n+ +q+m+++ erda+i+ernla+sekkaa+aerdmaflqrd+a+aern a++erd+++++l++++nsl Pbr005862.1 1 MDDGGHREngRHKAdQYKAAqgQWLMHNQpsMKQIMAIMGERDAAIQERNLAFSEKKAALAERDMAFLQRDAAIAERNSAIMERDSAIATLQYRDNSL 98 9*****999*****99*9554444444432146****************************************************************9 PP GAGA_bind 92 a....salpvgvqvlsgtksidslqqlse.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkk 180 + s++p+g+q+++g+k+++++qq+++ p++++++++ r+++++++ + a++ ++ ++++k+p+e+k+ +++kk++ks +kvk+ Pbr005862.1 99 NsgnvSSCPPGCQISRGVKHVHHTQQQQQhvhhmPHMNEPSYGSRDMHTSDSITMPPDASVPTK------SRQPKRPREPKTVQPNKKPSKSPRKVKR 190 999999*****************9994444888999**********998887775544443333......3456677777788888888888888888 PP GAGA_bind 181 esader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249 es+d + sk+++k++dl+ln+v++Dest+P+P+CsCtG lrqCYkWGnGGWqS+CCttt+S+yPLP++++ Pbr005862.1 191 ESEDLNkmtfdklhdwkggqdmgsggddlnkqvvvSKSDWKCQDLGLNQVAYDESTMPAPMCSCTGLLRQCYKWGNGGWQSSCCTTTMSMYPLPAVPN 288 887744478888999*********************************************************************************** PP GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkdhWAkHGtn+++ti+ Pbr005862.1 289 KRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 340 ***************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 2.2E-102 | 1 | 340 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 1.4E-176 | 1 | 340 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MDDGGHRENG RHKADQYKAA QGQWLMHNQP SMKQIMAIMG ERDAAIQERN LAFSEKKAAL 60 AERDMAFLQR DAAIAERNSA IMERDSAIAT LQYRDNSLNS GNVSSCPPGC QISRGVKHVH 120 HTQQQQQHVH HMPHMNEPSY GSRDMHTSDS ITMPPDASVP TKSRQPKRPR EPKTVQPNKK 180 PSKSPRKVKR ESEDLNKMTF DKLHDWKGGQ DMGSGGDDLN KQVVVSKSDW KCQDLGLNQV 240 AYDESTMPAP MCSCTGLLRQ CYKWGNGGWQ SSCCTTTMSM YPLPAVPNKR HARVGGRKMS 300 GSAFNKLLSR LAAEGHDLSN PVDLKDHWAK HGTNRYITIK * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr005862.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC770063 | 0.0 | KC770063.1 Pyrus pyrifolia microsatellite TXY167 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009335373.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_009350033.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Swissprot | Q8L999 | 1e-156 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A498HR19 | 0.0 | A0A498HR19_MALDO; Uncharacterized protein | ||||
STRING | XP_009335373.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009350033.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6905 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-150 | basic pentacysteine 6 |