PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005862.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family BBR-BPC
Protein Properties Length: 341aa    MW: 38085 Da    PI: 9.7598
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005862.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3951e-12013401301
    GAGA_bind   1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensl 91 
                  mdd g+re  r+k+ +y+ a  + l +n+   +q+m+++ erda+i+ernla+sekkaa+aerdmaflqrd+a+aern a++erd+++++l++++nsl
  Pbr005862.1   1 MDDGGHREngRHKAdQYKAAqgQWLMHNQpsMKQIMAIMGERDAAIQERNLAFSEKKAALAERDMAFLQRDAAIAERNSAIMERDSAIATLQYRDNSL 98 
                  9*****999*****99*9554444444432146****************************************************************9 PP

    GAGA_bind  92 a....salpvgvqvlsgtksidslqqlse.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkk 180
                  +    s++p+g+q+++g+k+++++qq+++     p++++++++ r+++++++  +   a++ ++      ++++k+p+e+k+ +++kk++ks +kvk+
  Pbr005862.1  99 NsgnvSSCPPGCQISRGVKHVHHTQQQQQhvhhmPHMNEPSYGSRDMHTSDSITMPPDASVPTK------SRQPKRPREPKTVQPNKKPSKSPRKVKR 190
                  999999*****************9994444888999**********998887775544443333......3456677777788888888888888888 PP

    GAGA_bind 181 esader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249
                  es+d +                             sk+++k++dl+ln+v++Dest+P+P+CsCtG lrqCYkWGnGGWqS+CCttt+S+yPLP++++
  Pbr005862.1 191 ESEDLNkmtfdklhdwkggqdmgsggddlnkqvvvSKSDWKCQDLGLNQVAYDESTMPAPMCSCTGLLRQCYKWGNGGWQSSCCTTTMSMYPLPAVPN 288
                  887744478888999*********************************************************************************** PP

    GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  +r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkdhWAkHGtn+++ti+
  Pbr005862.1 289 KRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 340
                  ***************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.2E-1021340IPR010409GAGA-binding transcriptional activator
SMARTSM012261.4E-1761340IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDDGGHRENG RHKADQYKAA QGQWLMHNQP SMKQIMAIMG ERDAAIQERN LAFSEKKAAL  60
AERDMAFLQR DAAIAERNSA IMERDSAIAT LQYRDNSLNS GNVSSCPPGC QISRGVKHVH  120
HTQQQQQHVH HMPHMNEPSY GSRDMHTSDS ITMPPDASVP TKSRQPKRPR EPKTVQPNKK  180
PSKSPRKVKR ESEDLNKMTF DKLHDWKGGQ DMGSGGDDLN KQVVVSKSDW KCQDLGLNQV  240
AYDESTMPAP MCSCTGLLRQ CYKWGNGGWQ SSCCTTTMSM YPLPAVPNKR HARVGGRKMS  300
GSAFNKLLSR LAAEGHDLSN PVDLKDHWAK HGTNRYITIK *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005862.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700630.0KC770063.1 Pyrus pyrifolia microsatellite TXY167 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335373.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009350033.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
SwissprotQ8L9991e-156BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A498HR190.0A0A498HR19_MALDO; Uncharacterized protein
STRINGXP_009335373.10.0(Pyrus x bretschneideri)
STRINGXP_009350033.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-150basic pentacysteine 6