PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005643.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 479aa    MW: 54232.4 Da    PI: 9.4903
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005643.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.4e-1634125999
                  HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   + + + ++lp k + ++     k  s  +tl+  +gr+W+v+++  + ++ +  l+ GW eFvk n+L++gD++v+ l+++++  + v +fr+
  Pbr005643.1  34 TYINGHSVWLPSKLCIHMrrL-GK-HSGAVTLRAFDGRTWSVEMKCeKATRPKLRLQYGWTEFVKGNNLEVGDVCVLVLIDDTKLVFEVVIFRT 125
                  445556799******888852.34.3448***************874444445***************************99999899999986 PP
2B363.72.8e-20366459398
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +v +++++ + + l l  kfa+eh ++ +    ++l+ + gr+W vkl ++ +++   +++GW +Fv++ngL+ gD++vF+l++++e    v +fr
  Pbr005643.1 366 TVVMHPSYIQANTLNLEAKFAREHLLNRTH-DNVILRVSGGRTWPVKL-HQYSKNVLKFQSGWMKFVQDNGLEIGDVCVFMLINNTEHLIDVVIFR 459
                  6677888888889***********777544.59***************.455555599*************************9866546666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2019125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-1820125IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-1725124No hitNo description
PROSITE profilePS5086312.29426126IPR003340B3 DNA binding domain
SMARTSM010191.2E-727126IPR003340B3 DNA binding domain
PfamPF023624.5E-1432125IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-24357459IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-23358459IPR015300DNA-binding pseudobarrel domain
CDDcd100175.62E-20363459No hitNo description
SMARTSM010192.3E-15364461IPR003340B3 DNA binding domain
PROSITE profilePS5086314.015364461IPR003340B3 DNA binding domain
PfamPF023621.4E-17365459IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MHASNARGKA AVALRRATAF KSDNPCFIVP MKRTYINGHS VWLPSKLCIH MRRLGKHSGA  60
VTLRAFDGRT WSVEMKCEKA TRPKLRLQYG WTEFVKGNNL EVGDVCVLVL IDDTKLVFEV  120
VIFRTTETAH TFSPPDVDGE QTMSQMEETD EDDDSIEIFD DFPTCSKTKT KSPIAPQPHK  180
KNITCSISIA ENHGKKFGGS SLTKKIMNRR TLQVLRKMNP VTAHGTNRAL QRARAFESEY  240
PSCTVVMSPS YIHAHYVKLM GEKTMSQMEE TDEDDDCVEI LDDSPPCLKT KKKSPIAKQR  300
HKKNRAGSIS TSENHMKKFG GSSWTKELVK RRPDQVPRMM NPLTVSGTNR ALQRARAFKS  360
EYPCCTVVMH PSYIQANTLN LEAKFAREHL LNRTHDNVIL RVSGGRTWPV KLHQYSKNVL  420
KFQSGWMKFV QDNGLEIGDV CVFMLINNTE HLIDVVIFRG RETADCTFSP GEQVFCWL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005643.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365446.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like
TrEMBLA0A498HHW41e-166A0A498HHW4_MALDO; Uncharacterized protein
STRINGXP_009365446.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14896412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-12related to vernalization1 1