PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005640.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 298aa    MW: 34035.2 Da    PI: 9.7177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005640.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.7e-149753499
                 SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 34 ktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   +tl+  +gr+W+v+++  + ++ ++ l+ GW eFv+ n+L++gD++v+ l+++++  + v +fr+
  Pbr005640.1  9 GAVTLRAFDGRTWSVEMKCeKATRPKVRLQYGWTEFVRGNNLEVGDVCVLVLIDDTKLVFEVVIFRT 75
                 3699*************874444445***************************99999899999986 PP
2B360.13.8e-19196288499
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  v++ps +   + ++l  kf++eh +k  +  +++l+ ++gr+W vkl  +++++++ l++GW  Fv++n+L+ gD++vF l+++ ++ + v +fr+
  Pbr005640.1 196 VMSPS-YIHAHYVYLGAKFTKEHFLKW-NYHQVILRVSDGRTWPVKL-SKRQKNMVRLQNGWITFVQDNHLEIGDVCVFALINNIKGLMDVVIFRT 288
                  44455.555556***********6664.4458***************.5888889***************************99555488888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.267176IPR003340B3 DNA binding domain
SMARTSM010190.12176IPR003340B3 DNA binding domain
CDDcd100171.03E-15474No hitNo description
SuperFamilySSF1019362.75E-14578IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-15675IPR015300DNA-binding pseudobarrel domain
PfamPF023627.0E-12875IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-23185287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-23186287IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-20191287No hitNo description
PROSITE profilePS5086312.943192289IPR003340B3 DNA binding domain
SMARTSM010191.2E-12193289IPR003340B3 DNA binding domain
PfamPF023622.7E-17194287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRRLGKHSGA VTLRAFDGRT WSVEMKCEKA TRPKVRLQYG WTEFVRGNNL EVGDVCVLVL  60
IDDTKLVFEV VIFRTTEIAH TFSPPDVDGE QTMSQMEETD EDDDSIEILD DFPTCSKTKT  120
KSPIAPQPHK KNRTCSISTA ENHRKKFGGS SLTKKIMNRR TLQVLRKMNP VTAHGTNRAL  180
QRARAFESEY PSCTVVMSPS YIHAHYVYLG AKFTKEHFLK WNYHQVILRV SDGRTWPVKL  240
SKRQKNMVRL QNGWITFVQD NHLEIGDVCV FALINNIKGL MDVVIFRTIE AARCNLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028953967.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A498HHW40.0A0A498HHW4_MALDO; Uncharacterized protein
STRINGXP_009376053.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14896412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.14e-13related to vernalization1 1