PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005503.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 537aa    MW: 60577.6 Da    PI: 6.8245
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005503.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix933.1e-29125210187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+l+L+e+r+ ++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Pbr005503.1 125 RWPRQETLTLLEIRSGLDFKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 210
                  8***********************************998*******************************98..55667*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.713124183IPR017877Myb-like domain
PfamPF138372.6E-19125211No hitNo description
CDDcd122031.76E-20125190No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MEMEDQYNMA DLRQLMNGGR THFPSIPLQP TTELFPNHHR GPPPPPPPSL HHQHHPYEQL  60
MMIDRPQAHE MIPRGLHHHH EFRSPDSTSA AGVTTPTTVT AAPSLSGGGL EAEAGGCLGG  120
EGSGRWPRQE TLTLLEIRSG LDFKFKEANQ KGPLWDEVSR IMCEEHGYQR SGKKCREKFE  180
NLYKYYKKTK EGKAGRQDGK HYRFFRQLEA LYGETTNTVV SPSLPAETHF VGNNSNNYRY  240
QAAGNAQANQ EITTPYHHQS SDQKHCDSLS LSNSSEFETS SSEDQDINND VSAAAMDNDS  300
QEAKTTRKRR GGIGRRGWKT KIKEFIDAQM RKLIEKQEEW LERLMRTLEQ KERERVVREE  360
EWRKQEVDRV EREQNFWAKE RAWIEARDKA LMDALHKISG GSSSTDQAKA TNYNSSSPDH  420
NDPDQIVHNM SRSAKELFMN KKRKENANSR SASAACYFQS NESCSSLYSS QGGYCGEMSN  480
DQGNHDGSNN SPNGGNNASN VGSNAVPDNC FPFLMSEGEN LWENYGLKLS KGSQNQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365339.10.0PREDICTED: trihelix transcription factor PTL
TrEMBLA0A498I1W60.0A0A498I1W6_MALDO; Uncharacterized protein
STRINGXP_009365339.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10000.11e-69Trihelix family protein