PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr005379.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | HSF | ||||||||
Protein Properties | Length: 437aa MW: 49633.1 Da PI: 4.9303 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.8 | 5.7e-36 | 15 | 105 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++ ++++swse+g+sfvv+d++efak++Lp yFkh+nf+SFvRQLn+YgF+k++ e+ weF++++F +g ++ll++i+ Pbr005379.1 15 FLTKTYDLVDDPSSNHMVSWSETGSSFVVWDPTEFAKEMLPMYFKHNNFSSFVRQLNTYGFRKIDPEQ---------WEFANEEFLRGGRHLLKNIH 102 9***************************************************************9998.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Pbr005379.1 103 RRK 105 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 7.9E-60 | 11 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.0E-38 | 12 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.09E-35 | 12 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.1E-19 | 15 | 38 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.8E-32 | 15 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 53 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 54 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MDGSQGGSGG APAPFLTKTY DLVDDPSSNH MVSWSETGSS FVVWDPTEFA KEMLPMYFKH 60 NNFSSFVRQL NTYGFRKIDP EQWEFANEEF LRGGRHLLKN IHRRKPIHSH SLQNHEYSSV 120 PLTDTEREEY EKKINRLNHD KSLLELEVQR HQRENQEFEF QIQILREQLQ NMENRQRQYT 180 AFLAQLVQKP GFASVLVQQS EIHSKKRRLL KSNDFPDDFG MEDLTLNPQK ETLGIKLDQL 240 EKMESSLNFW EDFLHGVGEA MPEEVNDIGP LSQASPIIVT EIQDTSMNSR PCSPRSHISS 300 PNSMNAHSFP EVAGSANLFD ILTITSMCHT VDFRSKSSAI DMNSKPDSAP ALDSSKENVA 360 EVKNAEPAKA NDVFWEQCLT ETPGLDDAPE VQSERMDSDG DGKASDVNPA IRKKLWWNTD 420 NVDNFRNQIG RPTPAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-25 | 6 | 104 | 12 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr005379.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009365270.1 | 0.0 | PREDICTED: heat stress transcription factor A-4b-like | ||||
TrEMBL | A0A498J3C6 | 0.0 | A0A498J3C6_MALDO; Uncharacterized protein | ||||
STRING | XP_009365270.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14100 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45710.1 | 1e-82 | HSF family protein |