PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005343.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 438aa    MW: 49631.9 Da    PI: 5.9066
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005343.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.2e-1591178196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+k +++s+v++  +l+lpk+f+  +   +  + tltle e g++++v++   + ++  + ++GW++F  an+L +g  +vF+l++  +f  +v +
  Pbr005343.2  91 FVKSMIRSNVSSCFCLTLPKQFCHLY--LPLHDATLTLEVEGGEKYRVTF--LGERR--IVSAGWQKFSTANKLLVGNLLVFRLVRPLKF--KVYI 178
                  89*********************555..3455679***************..66653..4688********************9986666..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1688180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-1989181IPR015300DNA-binding pseudobarrel domain
CDDcd100172.87E-2189178No hitNo description
PROSITE profilePS5086312.29491182IPR003340B3 DNA binding domain
SMARTSM010193.9E-1691182IPR003340B3 DNA binding domain
PfamPF023621.6E-1291178IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAMAAMLDWR HPQNFTLDMN VKEEEEEELA DSEYFPEEKE DDEDHGEAES LTVSQCKRKR  60
TIFDSFKDHE ISFVRNQVQD IQANIGADPV FVKSMIRSNV SSCFCLTLPK QFCHLYLPLH  120
DATLTLEVEG GEKYRVTFLG ERRIVSAGWQ KFSTANKLLV GNLLVFRLVR PLKFKVYIMG  180
RHSLAEVDAA FSLLKMKSCA TKEVFGKKHL MTPPRDVSQV NIQKKSLKLG TNPELDANQS  240
EDDNEDFTSN LAADITIQGP AADFEDVRII DNFPILVNGV TIDTQLSAQV RTIYYDLCCS  300
QGSFLHDNIL KSIDSKLAAE IITETTNIAN AIRACKLPPS RADCVMQEKT LHAFELLGMD  360
VGFLRARLKW CLSVASKYEV AAESKRYLEG KVEQVCMRDK MRDLDSKLSE LKETMESFDA  420
KIKALKKNSR KRELIFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005343.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349898.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A498IXN00.0A0A498IXN0_MALDO; Uncharacterized protein
STRINGXP_009349897.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-23B3 family protein