PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr005254.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 554aa MW: 62368.7 Da PI: 6.2314 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 447.3 | 1e-136 | 177 | 547 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l+++L+ cA+av+++dl +aq+++ +l++++s +g+p+qRl ay++e+L ar a+s+s++ykal+++e + s e l+++++++ev+P++kf+++ a Pbr005254.1 177 LKQVLIFCAKAVADNDLLMAQWMMDELRQMVSVSGEPIQRLGAYLLEGLVARKASSGSNIYKALRCKEPA---SCELLSYMHILYEVCPYFKFGYMSA 271 5799*****************************************************************9...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N aI ea++ e+ vHiiDf+i+qG QW++L+qa+asRp+gpp++RiTg++++ s + + +g+rL+k+Ae ++vpfef++ ++ + d++le+L Pbr005254.1 272 NGAIAEAMKDEDSVHIIDFQIGQGSQWVTLIQAFASRPGGPPHIRITGIDDSMSAyaRGGGPNIVGKRLSKLAELFKVPFEFHA-ASMSGCDVQLEHL 368 ***************************************************88878888999**********************.8999********* PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 v+pgEala+n++++lh+++desv+++++rd++L+lvkslsPkvv++veqe+++n++ F rf+e+l+yy+a+f+s++++lpr+++eri+vE+++l+r Pbr005254.1 369 CVRPGEALAINFAFMLHHMPDESVCTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFYPRFVETLNYYTAMFESIDVTLPRDHKERINVEQHCLAR 466 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e+vn++aceg er+erhe l+kWr r+ +aGF+p+pls+ +++++k+ll ++++ yr+ee++g+l+lgWk+r Lv+ +aWr Pbr005254.1 467 EVVNIIACEGVERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDNYSD-KYRLEERDGALYLGWKNRDLVASCAWR 547 *****************************************************5.5*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.493 | 151 | 528 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-134 | 177 | 547 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 554 aa Download sequence Send to blast |
MQASKEQRIS GMSNRLYCQP VQEVEAYCLP RFQTLEPRLH YNESSQSTHL PLQSFHEHYC 60 TLESSWSNGS YNVYNTPSNV SFSPSGSPMS QQDSHSYLSD QYHSPDQTYS SSISGSCITD 120 DATDFKYKLK QLETVMLGPD SNILDNYCIT FPNGASNSLP DEDSWGQIME SISKKDLKQV 180 LIFCAKAVAD NDLLMAQWMM DELRQMVSVS GEPIQRLGAY LLEGLVARKA SSGSNIYKAL 240 RCKEPASCEL LSYMHILYEV CPYFKFGYMS ANGAIAEAMK DEDSVHIIDF QIGQGSQWVT 300 LIQAFASRPG GPPHIRITGI DDSMSAYARG GGPNIVGKRL SKLAELFKVP FEFHAASMSG 360 CDVQLEHLCV RPGEALAINF AFMLHHMPDE SVCTQNHRDR LLRLVKSLSP KVVTLVEQES 420 NTNTAAFYPR FVETLNYYTA MFESIDVTLP RDHKERINVE QHCLAREVVN IIACEGVERV 480 ERHELLGKWR LRFAMAGFTP YPLSSLVNAT IKTLLDNYSD KYRLEERDGA LYLGWKNRDL 540 VASCAWRCKH STN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-64 | 184 | 546 | 26 | 378 | Protein SCARECROW |
5b3h_A | 4e-64 | 184 | 546 | 25 | 377 | Protein SCARECROW |
5b3h_D | 4e-64 | 184 | 546 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr005254.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009365203.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_018504884.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A498J5T7 | 0.0 | A0A498J5T7_MALDO; Uncharacterized protein | ||||
STRING | XP_009365203.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|