PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005182.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 1041aa    MW: 115053 Da    PI: 8.5526
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005182.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.3e-1176102127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C +++rtG C yG++C+F+H++
  Pbr005182.1  76 PGEPDCIYYLRTGLCGYGSNCRFNHPK 102
                  5789*********************96 PP
2zf-CCCH37.15.1e-12120144327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C +f++tGtCkyG++CkF+H++
  Pbr005182.1 120 QPDCGYFLKTGTCKYGSTCKFHHPR 144
                  789********************96 PP
3zf-CCCH36.77e-12167189527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   C++++rtG Ck+G+ CkF+H++
  Pbr005182.1 167 SCPYYMRTGSCKFGPACKFHHPQ 189
                  6********************97 PP
4zf-CCCH34.72.9e-11305330227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++Cr+f+ tGtCkyG  Ck++H++
  Pbr005182.1 305 DQPECRYFMSTGTCKYGIDCKYHHPK 330
                  689*********************96 PP
5zf-CCCH339.9e-11347373127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C++++ +G+CkyG++C+F H++
  Pbr005182.1 347 PGQPVCSHYLMYGICKYGPTCRFDHPF 373
                  5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.52675103IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-675102IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-977102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-580102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-481100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793117145IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6117144IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9120144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6122146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4123144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6161190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371163190IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5164189IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9166189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5167188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685303331IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5303330IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9305330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6306331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5309330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371346374IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6346373IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7348373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5349375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4351372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.40.50.18201.2E-1086811038IPR029058Alpha/Beta hydrolase fold
PfamPF040838.0E-20681739IPR006693Partial AB-hydrolase lipase domain
SuperFamilySSF534742.63E-506841038IPR029058Alpha/Beta hydrolase fold
PfamPF121469.8E-7745870IPR022742Serine aminopeptidase, S33
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006629Biological Processlipid metabolic process
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1041 aa     Download sequence    Send to blast
MTLVGEAEKK SRGKQHKGQV HANSVLPPMP DARQAQKNAV PSQSDGNVEE AFWRLTINDN  60
QERGGVAQAN SYPDRPGEPD CIYYLRTGLC GYGSNCRFNH PKYASQGNQY NGELPERVGQ  120
PDCGYFLKTG TCKYGSTCKF HHPRDRRGAG PVLFNVLGLP MHQEEKSCPY YMRTGSCKFG  180
PACKFHHPQP QSLGTVLPAF GSAGSTVVPS SGVPYVGGLS TWSIPRVPYI SGPRLQTPQS  240
YMPVVLPPQG IVPAHGWNTY VGNLSPVSST GILGSNLTYN SSTRGESASN GQVHLSSPSF  300
PQRPDQPECR YFMSTGTCKY GIDCKYHHPK ERIAESATTP LGLPSRPGQP VCSHYLMYGI  360
CKYGPTCRFD HPFMEQSASY NFGMQALPML DSSLISYPRG WSVAHGLETS PSLPSKLTDG  420
AKKPASNRYE NSDAKISEDS PEQAGSMSPS PTSSEPVQDQ SETPRWASLE CAMQRLRSSG  480
SLLSRSQAIT QLRKKAFRSW GAVQDTYFST KMKNNHNLEQ SEIRNIMDSG TIGLPSCIAT  540
AGTTLVIGYA LGWRGGRWYA NRKFRREQMK LLGQIKPKRW SLLRRIEPKA WQFQFLRRPL  600
TRPRTQDNPV KTSEKIKDTR TSHNLEDPIN LVSKQASCEF DTVMLFCESA VGTRTKLFLA  660
NNVQDAASAF APSPGDDGIC ATMVATQGYA CEEHTVTTQD GYILSMQRIP AGKSGGLSGK  720
RVPVLLQHGL LMDGITWVLL RPGQSLAFLL ADNGYEVWIG NTRGTKYSLG HTSLSPDDPA  780
YWEWSWDELV AYDLPATFQY VRDQTRQKIH YIGHSLGTLV ALAAISKDLQ LKNLRSAVLL  840
SPIAYADQMS SPLARAVAEN FIAEALYNAD LRQFNLKRKA AVEVLKAVCR KPGVDCTHWL  900
TAFTGKNCCL NSSIVDVLLD HEPQSTSTKN LVHMSQMIRD GTVAMFDYKD ENMQHYGQPN  960
PPVYSMTSIP DELPLFLSYG GADALSDIKD VKLLLKSLKN HDGDKLVLQY LDDYAHLDFV  1020
MGETAKQDVY DPLMAFLRLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hlg_A2e-6168010378366LIPASE, GASTRIC
1hlg_B2e-6168010378366LIPASE, GASTRIC
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005182.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498J3840.0A0A498J384_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-105C3H family protein