PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005158.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 334aa    MW: 37605.4 Da    PI: 6.7903
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005158.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.22.9e-082572892355
                  SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +yps++++  +A+++gL+ +q+ +WF N+R ++
  Pbr005158.1 257 PYPSEAQKLAMAESTGLELKQINNWFINQRKRH 289
                  8*****************************885 PP
2ELK40.65.4e-14209230122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK qLl+KYsgyLg+LkqEF+
  Pbr005158.1 209 ELKVQLLHKYSGYLGTLKQEFM 230
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-1662106IPR005540KNOX1
PfamPF037906.7E-2164102IPR005540KNOX1
SMARTSM012569.5E-25118169IPR005541KNOX2
PfamPF037913.0E-21123168IPR005541KNOX2
PfamPF037898.7E-9209230IPR005539ELK domain
SMARTSM011887.6E-7209230IPR005539ELK domain
PROSITE profilePS5121310.755209229IPR005539ELK domain
PROSITE profilePS5007111.208229292IPR001356Homeobox domain
SMARTSM003892.2E-10231296IPR001356Homeobox domain
SuperFamilySSF466891.6E-18231304IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-26234294IPR009057Homeodomain-like
CDDcd000863.24E-10241293No hitNo description
PfamPF059201.7E-16249288IPR008422Homeobox KN domain
PROSITE patternPS000270267290IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEGGSSRNSS NLGFLESSLA AALMNSETRT TSSNSYSKQF LSLPLINNNL QSHPHETTDQ  60
EMGVKAKIIA HPLFPRLLSA YVNCQKVGAP PEVVARLEQV CSAYNSEAAK RSSIRGGGGG  120
DDHPDPALDQ FMEAYCEMLT KYEEELTKPF KEAMLFLSNI DSQLKALTFN SNSSSESAST  180
SGGDFVGLGR SPEEANAIND MDPQAEDREL KVQLLHKYSG YLGTLKQEFM KKKKNGKLPK  240
EARHQLFDWW CRHYKWPYPS EAQKLAMAES TGLELKQINN WFINQRKRHW KPSEDMQFVL  300
MDPTLHQHHH YPNFCMDNAI RNPFSMDCTS TLL*
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005158.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2817745e-79GQ281774.1 Prunus persica class I KNOX homeobox transcription factor STM-like 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365095.10.0PREDICTED: homeobox protein knotted-1-like LET6
SwissprotP466081e-111HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A498J4860.0A0A498J486_MALDO; Uncharacterized protein
STRINGXP_009365095.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20393480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-104KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]