PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004931.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 363aa    MW: 40291.5 Da    PI: 7.761
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004931.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06326226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 k++lC+ffa  G C  G+ C F+H+
  Pbr004931.1  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                 99****6666.*************5 PP
2zf-CCCH22.61.9e-073454526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 +C f+++ G C +G+rC++ H+
  Pbr004931.1 34 ICTFYQK-GACAFGSRCRYEHV 54
                 7******.***********997 PP
3zf-CCCH20.68e-07142165226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C+ fa+ G C++G++C+ +Hg
  Pbr004931.1 142 DRAICS-FAAAGNCPRGEKCPHIHG 165
                  588999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0982956IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-53253IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.573140167IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4145165IPR000571Zinc finger, CCCH-type
SuperFamilySSF578508.25E-14200273No hitNo description
Gene3DG3DSA:3.30.40.102.9E-10202268IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001626.04E-4208268No hitNo description
SMARTSM001841.4E-7209266IPR001841Zinc finger, RING-type
PfamPF000972.9E-7209266IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.43209267IPR001841Zinc finger, RING-type
PROSITE patternPS005180233242IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.13296324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554296325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKAS PNNICTFYQK GACAFGSRCR YEHVKASQAQ  60
SSGSSSSTNS QPSLAIDSAS LALPVRTLAS RFSLAPLSLS ELSASSSPFL PPSKPAWNGS  120
LEGDYDNDES NVGETRSTRP EDRAICSFAA AGNCPRGEKC PHIHGDLCPS CGKHCLHPYR  180
PLEREEHMKT CEDKQKQLEA LKRSQEIECS VCLERVLSKP TVAERKFGIL SECDHPFCIS  240
CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY NSKEEKLEIV ESYKARLRSI  300
DCKHFDFGNG NCPFGTSCFY KHAYQDGRLE EVALRHLGNE DGQTVIATNI RLSDFLSDLH  360
IR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004931.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364994.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X2
SwissprotE0X9N41e-174C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A251Q9780.0A0A251Q978_PRUPE; Uncharacterized protein
STRINGXP_009364994.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-157C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]