PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004907.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YA
Protein Properties Length: 404aa    MW: 44744.7 Da    PI: 8.5485
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004907.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.42.1e-32163219158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k+rkpylheSRh hAlrR+Rg+gGrF
  Pbr004907.1 163 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKARKPYLHESRHLHALRRARGCGGRF 219
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.9E-38161222IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.512162222IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.5E-27164219IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.6E-23165187IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860167187IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.6E-23196219IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MMPAKSNEDP HIEHGAETVL QPVYSQPWWR GVGNGTASSM VDHSNSMVMN GAMQAQTSAR  60
LDGRANFNKE LRTTAESQSD GNSGSENQRT KSVSSSVVPA MGEHVDPNSQ MELVGHSIVM  120
SSYPYADPQY GGMLTPYGPQ TMLPPHFYGM HPGRMPLPPD MEEEPVYVNA KQYHGILRRR  180
QSRAKAELEK KLIKARKPYL HESRHLHALR RARGCGGRFL NTKKQDDNDE NSSLEKGMNL  240
DGNHSAESAK SGFESCPNTS NGNFDSSNVQ QDRSGQWLRT HSHHTHSNGN GPSSAYPSTF  300
GDSKESVFLG QQRENMQLNG SSRGAIPKAC ILQEMLKACR VSLGGNPAAQ CQYPATHSWL  360
WSLCNYWGWG GRRWWWSSCR LEPAIACTHS CCRNSNNRHQ LGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20163226265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004907.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364962.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like
TrEMBLA0A498JKA60.0A0A498JKA6_MALDO; Uncharacterized protein
STRINGXP_009364962.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.17e-38nuclear factor Y, subunit A7