PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr004905.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NF-YA

Protein Properties

Length: 181aa MW: 20132.2 Da PI: 9.9378

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr004905.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.1	1.1e-31	14	70	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+ ak+e ekkl +k+rkpylheSRh hAlrR+Rg+gGrF Pbr004905.1 14 EEPVYVNAKQYHGILRRRQSHAKAELEKKL-IKARKPYLHESRHLHALRRARGCGGRF 70 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.8E-36	12	73	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.468	13	73	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.6E-26	15	70	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-23	16	38	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-23	47	70	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MHPGRMPLPP DMEEEPVYVN AKQYHGILRR RQSHAKAELE KKLIKARKPY LHESRHLHAL 60 RRARGCGGRF LNTKKQDDND ENSSLEKGMN LDGNHSAESA KSGFESCPNT SNGNFDSSNV 120 QQDRSGQWLR THSHHTHSNG NGPSSAYPST FGDSKESVFL GQQRENMQLN GSSRGAIPSK 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	8e-21	14	77	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr004905.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009364960.1	1e-133	PREDICTED: nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	2e-40	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A314ZGV3	1e-104	A0A314ZGV3_PRUYE; Nuclear transcription factor Y subunit A-1
STRING	XP_009364960.1	1e-132	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8962	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	7e-36	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]