PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004866.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 365aa    MW: 41136 Da    PI: 4.3897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004866.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.1e-12198241654
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Pbr004866.1 198 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 241
                  589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15196256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9198241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-15199254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.82E-5199245No hitNo description
CDDcd048738.49E-5290331No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MELNEHGFLE ELLALRRDSS SSSTWETNIP TEMNELLSSS GSWGNFDYFD QQNPSSSFLP  60
ISSCTHEFSP SFEPNFNSSN FNSNTTVNQE VYYPLGFGIT DEALLSAHQQ VTDSSYNTLD  120
TPPFPVPEDN PWSMLEEEEL GFPGDEMHNL ETQAEAAGCK VEPTQSPDQV PAFNIGMCVE  180
RNTRANNKKL QGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTSI LGDTIDYMKE  240
LLERINNLQQ EIEADPDQLN VMSLFKDIKP NEMLVRNSPK FDVQRRNVDT KIDICCTGKP  300
GLLLSTVSTL EALGLQIQQC VISCFNEFAM QASCSEDFDQ RTMVTSEDIK QALYRNAGYG  360
GRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200207ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004866.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894170.0KP689417.1 Prunus pseudocerasus isolate Unigene13489 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349682.10.0PREDICTED: transcription factor bHLH93-like
RefseqXP_018501498.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL12e-84BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A498HSQ50.0A0A498HSQ5_MALDO; Uncharacterized protein
STRINGXP_009349682.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-86beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]