PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr004681.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Dof | ||||||||
Protein Properties | Length: 385aa MW: 40828.8 Da PI: 8.5712 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.1 | 1.1e-39 | 42 | 102 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+al+cprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk + Pbr004681.1 42 PEQALNCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKIR 102 6899******************************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-24 | 43 | 94 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.4E-33 | 44 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.357 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MMSSDTAPPT KPKHDENPTG GSGSSRPKAT SSSSSGPKLP PPEQALNCPR CDSPNTKFCY 60 YNNYSLTQPR HFCKTCRRYW TKGGALRNVP IGGGCRKNKK IRSSSSSNSR LSCSFDPSKD 120 SAGSSSSENM MLGGLKFFHG ISPAMDFQLG SISRLHNSNQ FSTNLATGIN FNNPFPAFGD 180 VSGTSGLSTS TLEPSSGGGT NACNNSFLGF NYPLTLGGRG GSASGSGGLI SAQNMMSAMN 240 VHSSLASSIE SLSSINQDLH WKLQQQRLAM LFGTEEHDQS TQSQLENQQK TQQMIAPISL 300 FQNLEVSSSP RPDHHQGVSH GRKEGGDTAT EWFFGNSYAP AVTQTPTNSG GGGGGGASNE 360 NASNWPHGIP AWSSHDWQQY NVLP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr004681.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009364798.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.7 | ||||
TrEMBL | A0A498HTP4 | 0.0 | A0A498HTP4_MALDO; Uncharacterized protein | ||||
STRING | XP_009364798.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3854 | 34 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 4e-30 | DOF zinc finger protein 1 |