PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr004663.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 358aa MW: 39705.8 Da PI: 4.9467 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 7.9e-12 | 190 | 233 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Pbr004663.1 190 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 233 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.1E-15 | 182 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.491 | 184 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 190 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-12 | 190 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-14 | 191 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.55E-5 | 191 | 237 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MELSQHGFLE ELLLAPRRDS WSSYSSGLNE LFPINGWSFD SFEENPVLVS SINPQFVGFS 60 TTQPTFEECP FTTTTTASSS SYPFVVGGLC AVPEINNTTT PPPFPPQDHQ DYPSMVEDEE 120 FGNFLGSENH SSCLELEKGK NNNNISTCKV EMDQQAADHH IIPSAFTMGL CGEKRSSKSK 180 KSEGQPSKNL MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERINKL 240 QEAGVEEGTN QISLMGTSKD LNPSEVLVRN SPKFDVERRD KDTRIGICCA TKPGLLLSTV 300 NTIEALGLEI QQCVISCFND FSMQASCFEG AGQRDLLSPQ DIKQALFRNA GYGGRCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 199 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr004663.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689416 | 0.0 | KP689416.1 Prunus pseudocerasus isolate Unigene13488 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009364789.1 | 0.0 | PREDICTED: transcription factor bHLH93-like isoform X1 | ||||
Swissprot | Q9LSL1 | 1e-90 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A498HVR0 | 0.0 | A0A498HVR0_MALDO; Uncharacterized protein | ||||
STRING | XP_009364789.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 2e-89 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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