PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr004607.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 750aa MW: 83917.4 Da PI: 6.7966

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr004607.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	382.7	4.4e-117	376	747	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+a +++d++ a++lL ++++++sp gd +qRla++f+++L+arla+++s++yk l +++ts ++ l+a++l+ +sP+ k+s+++ Pbr004607.1 376 LRTLLISCAQAAAADDHRTANELLRKVRQHSSPFGDGTQRLAHCFANGLEARLAGTGSQIYKGLVSKRTS---AADFLKAYHLYLAASPFKKMSNFVS 470 6789**********************************************************999999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N +I + +e+++r+H+iDf+i +G+QWp+L+q ++ R++gpp++RiTg++ p++g +e++eetg+rLa +Ae+++vpfe+n+ +ak++e+++leeL Pbr004607.1 471 NVTIRNLAEKSTRLHVIDFGILYGFQWPTLIQRISWREGGPPKVRITGIEFPQPGfrPAERVEETGRRLAAYAENFKVPFEYNA-IAKKWETITLEEL 567 **************************************************9*************************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+l+Vnl ++ ++lldesvs++s r++vL l+++++P+++++ + +n++ F++rf eal ++salfd+le+ +pre++er+ +E+e++gr Pbr004607.1 568 KIDKDEVLVVNLLYRGKNLLDESVSVDSVRNRVLALIRRINPDIFIHGIVNGAYNAPFFVTRFREALFHFSALFDMLETVVPREDQERMLIEKEIFGR 665 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e++nv+aceg er+er et+++W+ r +aGF+++p++ + +k a ++ + + + ++e+s++l++gWk+r+++++SaW+ Pbr004607.1 666 EAMNVIACEGWERVERPETYKQWQVRNLRAGFEQIPFDRELVKRAAKKVSSLYHKDFVIDENSQWLLQGWKGRTVFALSAWK 747 ******************************************9999999888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.291	350	727	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-114	376	747	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MDPRLRAFSD SFNGVQLGNQ PLPILSQPTV EAASRFDGKT CLDNNYRNFD YPQPGLTPNS 60 VSSYSSVSPE DDSAEDCDFS DVVLKYINQM LMEEDMEEKT CMLQESLELQ AAEKSFYEVL 120 GKKYPPSPDL YRGYAGQYGE SPGESSSGTW SNYITSSCNS GGYFGDNSSI QSPDGYSSQL 180 QGLPDYSISQ SFNGSSTRVS GLDGLVDAPS SSIYTPDLKT ESQSVWQFRK GVEEASRFLP 240 SETNLVVDLE ANGMLVHVPN VGTGAPFVKA ERKDGGEYSS GRSRGKKNLY RDDEDVEEKR 300 SSKQAAVSSE SPLRSEMFDV VLLCSTGEGR ERLGSLREAL QNGMSKSVQQ KGQSTGSNGR 360 KGRGKKLSVK REVVDLRTLL ISCAQAAAAD DHRTANELLR KVRQHSSPFG DGTQRLAHCF 420 ANGLEARLAG TGSQIYKGLV SKRTSAADFL KAYHLYLAAS PFKKMSNFVS NVTIRNLAEK 480 STRLHVIDFG ILYGFQWPTL IQRISWREGG PPKVRITGIE FPQPGFRPAE RVEETGRRLA 540 AYAENFKVPF EYNAIAKKWE TITLEELKID KDEVLVVNLL YRGKNLLDES VSVDSVRNRV 600 LALIRRINPD IFIHGIVNGA YNAPFFVTRF REALFHFSAL FDMLETVVPR EDQERMLIEK 660 EIFGREAMNV IACEGWERVE RPETYKQWQV RNLRAGFEQI PFDRELVKRA AKKVSSLYHK 720 DFVIDENSQW LLQGWKGRTV FALSAWKPA*

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MDPRLRAFSD SFNGVQLGNQ PLPILSQPTV EAASRFDGKT CLDNNYRNFD YPQPGLTPNS  60
VSSYSSVSPE DDSAEDCDFS DVVLKYINQM LMEEDMEEKT CMLQESLELQ AAEKSFYEVL  120
GKKYPPSPDL YRGYAGQYGE SPGESSSGTW SNYITSSCNS GGYFGDNSSI QSPDGYSSQL  180
QGLPDYSISQ SFNGSSTRVS GLDGLVDAPS SSIYTPDLKT ESQSVWQFRK GVEEASRFLP  240
SETNLVVDLE ANGMLVHVPN VGTGAPFVKA ERKDGGEYSS GRSRGKKNLY RDDEDVEEKR  300
SSKQAAVSSE SPLRSEMFDV VLLCSTGEGR ERLGSLREAL QNGMSKSVQQ KGQSTGSNGR  360
KGRGKKLSVK REVVDLRTLL ISCAQAAAAD DHRTANELLR KVRQHSSPFG DGTQRLAHCF  420
ANGLEARLAG TGSQIYKGLV SKRTSAADFL KAYHLYLAAS PFKKMSNFVS NVTIRNLAEK  480
STRLHVIDFG ILYGFQWPTL IQRISWREGG PPKVRITGIE FPQPGFRPAE RVEETGRRLA  540
AYAENFKVPF EYNAIAKKWE TITLEELKID KDEVLVVNLL YRGKNLLDES VSVDSVRNRV  600
LALIRRINPD IFIHGIVNGA YNAPFFVTRF REALFHFSAL FDMLETVVPR EDQERMLIEK  660
EIFGREAMNV IACEGWERVE RPETYKQWQV RNLRAGFEQI PFDRELVKRA AKKVSSLYHK  720
DFVIDENSQW LLQGWKGRTV FALSAWKPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-50	383	748	26	380	Protein SCARECROW
5b3h_A	1e-50	383	748	25	379	Protein SCARECROW
5b3h_D	1e-50	383	748	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr004607.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009349460.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A498IBE6	0.0	A0A498IBE6_MALDO; Uncharacterized protein
STRING	XP_009349460.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein