PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004385.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 287aa    MW: 32406.5 Da    PI: 4.8703
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004385.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.72e-15139197265
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                  W+++e laL+++r+ me+++ +       We+vs++++e gf+rs+++Ckek+e+ ++++ +i+
  Pbr004385.1 139 WSNDELLALLRIRSTMENWFPEF-----AWEHVSRNLAELGFKRSAEKCKEKFEEESRYFNNIN 197
                  ********************998.....9*******************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-10137198No hitNo description
PROSITE profilePS500906.191138190IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MFNGVPAEQL HQFIASSRTS LPLPLPLPLP LSSFPPPPSN NNINTFPVPA ATPFDPYNNN  60
NPFHLHHHQL LQIQPHQLHQ NNQLLQLHRQ SAATPKNLEE KEELSSTVSN SINNNLETEG  120
ERSSLIPASS DVSIISDSWS NDELLALLRI RSTMENWFPE FAWEHVSRNL AELGFKRSAE  180
KCKEKFEEES RYFNNINFTK NYSFLGDLEQ LCQGGGGDAH QQNADDHHRN PADHQEAPED  240
KNNEKEKVEK PSDEGGHQDS TRNETIVGDS IGVISTELLW GQYRYD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004385.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018504728.10.0PREDICTED: trihelix transcription factor GTL2
TrEMBLA0A498IJW51e-130A0A498IJW5_MALDO; Uncharacterized protein
STRINGXP_009364525.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.15e-15Trihelix family protein