PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004384.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 361aa    MW: 40638.7 Da    PI: 8.9349
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004384.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.84e-30231323186
     trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+++evlaLi++r ++ ++ + g          k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  Pbr004384.1 231 RWPRDEVLALINLRCSLFNNGGGGDqdkdggvvMKAPLWERISQGMLEMGYTRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 323
                  8**************999999976556678888*********************************************8.9999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.5E-18230324No hitNo description
CDDcd122031.37E-21230303No hitNo description
PROSITE profilePS500906.353231296IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLNPEEHNEK EVVVETRPKN NTKKRKRQRK FEMLKGFCED IVNRMMARQE AMHNKLLEEM  60
VKRNEEKLAR EEAWKKQETD RMNKELEIMA REQAVAGDRQ ATVIKFLKKF TSSSSNSSTS  120
TSSFPIQAQK PNRPTCNDVS GRKELDHHQE KENNPTTPSS LTESTLAPQS PSSSALAPTP  180
IAVPTMTILS RATAAAAVVV APPENPSSDD VIINTQNPSS ISHDKQDLGK RWPRDEVLAL  240
INLRCSLFNN GGGGDQDKDG GVVMKAPLWE RISQGMLEMG YTRSAKRCKE KWENINKYFR  300
KTKDVNKKRS LDSRTCPYFH QLSSLYNQGI LVPPSDHAPE DRPTSPENHS LGDDDSTKHD  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11725PKNNTKKRK
22328KRKRQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004384.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018504728.10.0PREDICTED: trihelix transcription factor GTL2
TrEMBLA0A498IJW50.0A0A498IJW5_MALDO; Uncharacterized protein
STRINGXP_009364525.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.12e-44Trihelix family protein