PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004234.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 203aa    MW: 23167 Da    PI: 8.6454
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004234.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.72e-25957149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifss+gkl+e 
  Pbr004234.1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSSQGKLFEL 57
                 79********************************************996 PP
2K-box53.69.7e-1981174699
        K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  ++++ e+++   ++e++ +k+eie Lq+ +R +   + ++++l eLq Le++Le+ + ++Rs K+++l+++i+ l++ e  l  +nk+L+ k+e
  Pbr004234.1  81 TEQTMETQTLDAKKEINLMKQEIEILQKGLRYMFDGGAGTMTLDELQVLEKHLETWIYHVRSAKMDILFQEIQLLRNSEGILAAANKYLQDKIE 174
                  4556778888999******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.58E-28177IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.59161IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-36160IPR002100Transcription factor, MADS-box
CDDcd002652.49E-40272No hitNo description
PRINTSPR004045.1E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-273859IPR002100Transcription factor, MADS-box
PfamPF014864.2E-1888173IPR002487Transcription factor, K-box
PROSITE profilePS5129710.88489179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSS QGKLFELATK  60
GSMQGLIERY MKMKPTRAPQ TEQTMETQTL DAKKEINLMK QEIEILQKGL RYMFDGGAGT  120
MTLDELQVLE KHLETWIYHV RSAKMDILFQ EIQLLRNSEG ILAAANKYLQ DKIEVNTGAN  180
DFMPIATDNT YPLTIPNDIY EF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-16159159MEF2C
5f28_B6e-16159159MEF2C
5f28_C6e-16159159MEF2C
5f28_D6e-16159159MEF2C
6byy_A7e-16159159MEF2 CHIMERA
6byy_B7e-16159159MEF2 CHIMERA
6byy_C7e-16159159MEF2 CHIMERA
6byy_D7e-16159159MEF2 CHIMERA
6bz1_A8e-16159159MEF2 CHIMERA
6bz1_B8e-16159159MEF2 CHIMERA
6bz1_C8e-16159159MEF2 CHIMERA
6bz1_D8e-16159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004234.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640210.0KP164021.1 Pyrus pyrifolia clone PpAGL12-2 AGL12-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009379081.11e-150PREDICTED: agamous-like MADS-box protein AGL12
SwissprotQ388417e-81AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A0D4ZY501e-139A0A0D4ZY50_PYRPY; AGL12-like MADS-box protein
STRINGXP_009379081.11e-150(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.13e-83AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]