PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003924.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 308aa    MW: 34668.7 Da    PI: 9.5606
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003924.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.46.3e-39551942130
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssasnsss 87 
                  ++kkd+hski T++g+RdRRvRls+++ ++fFdLqd+LGfd++skt+eWLl+++ +ai +l               s ss sec              
  Pbr003924.1  55 PAKKDQHSKIFTAQGLRDRRVRLSIDVSRQFFDLQDRLGFDTASKTLEWLLNKSRKAIRDLRTRknnlscsserskSLSSTSEC-------------- 138
                  78***********************************************************99956555544433322233444.............. PP

          TCP  88 g..............kaaksaakskksqksaasalnlakesrakarararertrekm 130
                  +              +++k+    k +++++a    +akesraka ararer r k+
  Pbr003924.1 139 KdvvsdinevdnhvvSKEKEMVMMKLKESESA-GAYVAKESRAKAIARARERARAKK 194
                  12333333444455444444444444444444.68999*************766553 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.6E-3756194IPR005333Transcription factor, TCP
PROSITE profilePS5136932.12757115IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.172176193IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAPSAHQTLT HLGVSSNTVP PSINAPVSSS CGDLHHHQYS NYVLHSSRQD VVVAPAKKDQ  60
HSKIFTAQGL RDRRVRLSID VSRQFFDLQD RLGFDTASKT LEWLLNKSRK AIRDLRTRKN  120
NLSCSSERSK SLSSTSECKD VVSDINEVDN HVVSKEKEMV MMKLKESESA GAYVAKESRA  180
KAIARARERA RAKKVCITSR RPQQILNQMN LFNEQLNDHE TNISSSSKVN FGDHHVNQEL  240
GSLLDNQAHH HHCQEEDQSA LIKRNKMKLF SSVVSNYNTT DQSSSNSYLQ FTNSSQYWDI  300
NGAFPMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1462115154Putative transcription factor PCF6
5zkt_B2e-1462115154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003924.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349286.20.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A498HB270.0A0A498HB27_MALDO; Uncharacterized protein
STRINGXP_009349286.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.27e-27TCP family protein