PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr003924.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 308aa MW: 34668.7 Da PI: 9.5606 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.4 | 6.3e-39 | 55 | 194 | 2 | 130 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssasnsss 87 ++kkd+hski T++g+RdRRvRls+++ ++fFdLqd+LGfd++skt+eWLl+++ +ai +l s ss sec Pbr003924.1 55 PAKKDQHSKIFTAQGLRDRRVRLSIDVSRQFFDLQDRLGFDTASKTLEWLLNKSRKAIRDLRTRknnlscsserskSLSSTSEC-------------- 138 78***********************************************************99956555544433322233444.............. PP TCP 88 g..............kaaksaakskksqksaasalnlakesrakarararertrekm 130 + +++k+ k +++++a +akesraka ararer r k+ Pbr003924.1 139 KdvvsdinevdnhvvSKEKEMVMMKLKESESA-GAYVAKESRAKAIARARERARAKK 194 12333333444455444444444444444444.68999*************766553 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.6E-37 | 56 | 194 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.127 | 57 | 115 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.172 | 176 | 193 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MAPSAHQTLT HLGVSSNTVP PSINAPVSSS CGDLHHHQYS NYVLHSSRQD VVVAPAKKDQ 60 HSKIFTAQGL RDRRVRLSID VSRQFFDLQD RLGFDTASKT LEWLLNKSRK AIRDLRTRKN 120 NLSCSSERSK SLSSTSECKD VVSDINEVDN HVVSKEKEMV MMKLKESESA GAYVAKESRA 180 KAIARARERA RAKKVCITSR RPQQILNQMN LFNEQLNDHE TNISSSSKVN FGDHHVNQEL 240 GSLLDNQAHH HHCQEEDQSA LIKRNKMKLF SSVVSNYNTT DQSSSNSYLQ FTNSSQYWDI 300 NGAFPMP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-14 | 62 | 115 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-14 | 62 | 115 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr003924.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009349286.2 | 0.0 | PREDICTED: transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A498HB27 | 0.0 | A0A498HB27_MALDO; Uncharacterized protein | ||||
STRING | XP_009349286.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 7e-27 | TCP family protein |