PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr003874.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 465aa MW: 53098.6 Da PI: 8.5869

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr003874.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	384.4	1.3e-117	89	459	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l+ lL+ cA+avs++d + a++lL+++++++sp gd qRla++f+ AL+arla+++++ly al++++t ++ l+a++++ +++P++k ++a Pbr003874.1 89 LRALLILCAQAVSADDRRTANELLKQIRQHSSPFGDGSQRLAHCFAYALEARLAGTGTQLYTALSSKRTL---DADMLKAYQTYIKACPFMKAVIVIA 183 5789*********************************************************9999987...899****************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I + +e++e++HiiDf+i +G+QWpaL++ L+ Rp+gpp+lRiTg++ p+sg +e+++etg+rLak++e+ +vpfe+n ++k++e++++eeL Pbr003874.1 184 NHTISKLAEKAETLHIIDFGILYGFQWPALIHCLSRRPGGPPKLRITGIELPRSGfrPEERVQETGHRLAKYCERYNVPFEYNG-IVKKWETIQYEEL 280 **************************************************9*************************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +vk++E+laVn ++ ++llde+v+++s+rd+vL+l+++++P++++++ + ++n++ F++rf eal ++sa+fd+ +++lpre+ +r + E+e+lgr Pbr003874.1 281 KVKRDEVLAVNNLFRFYNLLDETVTVNSPRDAVLNLIRGMNPEIFILSIINGSYNAPFFVTRFREALLHFSAFFDMCDTNLPREDPTRLMFEEEFLGR 378 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 eivn vaceg+er+ r et+++W+ r ++aGFk++pl+ + +++ ++ ++ + + + v+e+ +++++gWk+r ++s S+W Pbr003874.1 379 EIVNTVACEGSERVVRPETYKQWQVRNTRAGFKQLPLDRELMNKLRSKVKLGYHRDFVVDEDGNWMLQGWKGRIIYSSSCW 459 *************************************************999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.946	63	440	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.6E-115	89	459	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MDHPTFNGVP DYMNGFSIGD LAFSPNSTQF PNLINEYQFN QLSPDPNFMG SFCQNEANKA 60 LQQNEQSVGT SNGKTRAKKN GDKKEVVDLR ALLILCAQAV SADDRRTANE LLKQIRQHSS 120 PFGDGSQRLA HCFAYALEAR LAGTGTQLYT ALSSKRTLDA DMLKAYQTYI KACPFMKAVI 180 VIANHTISKL AEKAETLHII DFGILYGFQW PALIHCLSRR PGGPPKLRIT GIELPRSGFR 240 PEERVQETGH RLAKYCERYN VPFEYNGIVK KWETIQYEEL KVKRDEVLAV NNLFRFYNLL 300 DETVTVNSPR DAVLNLIRGM NPEIFILSII NGSYNAPFFV TRFREALLHF SAFFDMCDTN 360 LPREDPTRLM FEEEFLGREI VNTVACEGSE RVVRPETYKQ WQVRNTRAGF KQLPLDRELM 420 NKLRSKVKLG YHRDFVVDED GNWMLQGWKG RIIYSSSCWV PSRS*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MDHPTFNGVP DYMNGFSIGD LAFSPNSTQF PNLINEYQFN QLSPDPNFMG SFCQNEANKA  60
LQQNEQSVGT SNGKTRAKKN GDKKEVVDLR ALLILCAQAV SADDRRTANE LLKQIRQHSS  120
PFGDGSQRLA HCFAYALEAR LAGTGTQLYT ALSSKRTLDA DMLKAYQTYI KACPFMKAVI  180
VIANHTISKL AEKAETLHII DFGILYGFQW PALIHCLSRR PGGPPKLRIT GIELPRSGFR  240
PEERVQETGH RLAKYCERYN VPFEYNGIVK KWETIQYEEL KVKRDEVLAV NNLFRFYNLL  300
DETVTVNSPR DAVLNLIRGM NPEIFILSII NGSYNAPFFV TRFREALLHF SAFFDMCDTN  360
LPREDPTRLM FEEEFLGREI VNTVACEGSE RVVRPETYKQ WQVRNTRAGF KQLPLDRELM  420
NKLRSKVKLG YHRDFVVDED GNWMLQGWKG RIIYSSSCWV PSRS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-54	96	461	26	380	Protein SCARECROW
5b3h_A	1e-54	96	461	25	379	Protein SCARECROW
5b3h_D	1e-54	96	461	25	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr003874.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009364419.2	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A498KFV6	0.0	A0A498KFV6_MALDO; Uncharacterized protein
STRING	XP_009364419.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]