PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr003871.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 684aa MW: 77183.8 Da PI: 6.2568

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr003871.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	364.5	1.4e-111	310	680	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lL++cA+av+s d++ a++ L+++++ +sp+gd+ qRla+yf+ +L+arla+ ++ y+ l +++s +e l+a+++ + sP+ sh++aN Pbr003871.1 310 STLLTQCAQAVASYDQQTARERLQKIRHYSSPRGDAKQRLAHYFADGLEARLAGATTPSYSFLVGTQSS---AAEILKAFQVSVSSSPFKHTSHFVAN 404 579**************************************************99999999999998...9*********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 ++I++ e+++r+Hi+Df+i +G+QWp+++q L++Rp+gpp+lRiT+++ p++g +e++eet++rL+k+Ae+++vpfe nv +a+++e++++e+L+ Pbr003871.1 405 RTIMKLSENATRLHIVDFGIDYGFQWPCFIQHLSERPGGPPKLRITAIELPQPGfrPTERVEETARRLKKYAERFNVPFECNV-IAQKWETIKFEDLK 501 *************************************************9************************9.7********* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 ++++E ++Vn++++l++++de+ l+s +rd vLkl+++++P+v+++ + ++++ F++rf eal +ysalfd +ea++pre+e r E+++ g Pbr003871.1 502 IDRNEPTVVNCMFRLKNIPDETEMLSSasPRDIVLKLIRKINPDVFIHGIVNGTYTAPFFAARFREALFHYSALFDIFEATVPREDEMRLLFEKAVYG 599 ****************9988877779**************************************************************** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r+ivnv+aceg er+er et+++W+ r +aGFk++pl+++ kq++++ + ++ d + ++e+ +++++gWk++ L+++S W Pbr003871.1 600 RDIVNVIACEGLERVERPETYKQWQFRNVRAGFKQLPLDQELLKQVRRMSKCYH-DDFWIDEDGNWMLQGWKGKILLAISIW 680 ********************************************998888.55*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.955	283	662	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-109	310	680	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MDTLLERCDV SMERFNFGVH PHQNLVNGFK MDHESTYSIF LPTNVDHNSS DSSPPLNTGS 60 DGDSTDPGDF NHPVLKHISD ILLEEDLEGK PCMLQDCLAL QAAEKSFFDV LNPRGPPSPN 120 QPPLSHSLEN PDDDSTPSSH SCNGTSIPSE TSHFQSYLAE SQSDNVLVSD PLSEMQSFGH 180 FGGVGEACKF LPNESFGTID LERCHLMSPG PGPCPPGIRT LMRRPENDGH NSTNILKGKK 240 HHQREDGDYP EEGRSSKQPV AFADDSEPQE MFDEVLLSHG RHHFGNKQSK GSKTTRSKKQ 300 NSNAEIVDLS TLLTQCAQAV ASYDQQTARE RLQKIRHYSS PRGDAKQRLA HYFADGLEAR 360 LAGATTPSYS FLVGTQSSAA EILKAFQVSV SSSPFKHTSH FVANRTIMKL SENATRLHIV 420 DFGIDYGFQW PCFIQHLSER PGGPPKLRIT AIELPQPGFR PTERVEETAR RLKKYAERFN 480 VPFECNVIAQ KWETIKFEDL KIDRNEPTVV NCMFRLKNIP DETEMLSSAS PRDIVLKLIR 540 KINPDVFIHG IVNGTYTAPF FAARFREALF HYSALFDIFE ATVPREDEMR LLFEKAVYGR 600 DIVNVIACEG LERVERPETY KQWQFRNVRA GFKQLPLDQE LLKQVRRMSK CYHDDFWIDE 660 DGNWMLQGWK GKILLAISIW VPA*

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MDTLLERCDV SMERFNFGVH PHQNLVNGFK MDHESTYSIF LPTNVDHNSS DSSPPLNTGS  60
DGDSTDPGDF NHPVLKHISD ILLEEDLEGK PCMLQDCLAL QAAEKSFFDV LNPRGPPSPN  120
QPPLSHSLEN PDDDSTPSSH SCNGTSIPSE TSHFQSYLAE SQSDNVLVSD PLSEMQSFGH  180
FGGVGEACKF LPNESFGTID LERCHLMSPG PGPCPPGIRT LMRRPENDGH NSTNILKGKK  240
HHQREDGDYP EEGRSSKQPV AFADDSEPQE MFDEVLLSHG RHHFGNKQSK GSKTTRSKKQ  300
NSNAEIVDLS TLLTQCAQAV ASYDQQTARE RLQKIRHYSS PRGDAKQRLA HYFADGLEAR  360
LAGATTPSYS FLVGTQSSAA EILKAFQVSV SSSPFKHTSH FVANRTIMKL SENATRLHIV  420
DFGIDYGFQW PCFIQHLSER PGGPPKLRIT AIELPQPGFR PTERVEETAR RLKKYAERFN  480
VPFECNVIAQ KWETIKFEDL KIDRNEPTVV NCMFRLKNIP DETEMLSSAS PRDIVLKLIR  540
KINPDVFIHG IVNGTYTAPF FAARFREALF HYSALFDIFE ATVPREDEMR LLFEKAVYGR  600
DIVNVIACEG LERVERPETY KQWQFRNVRA GFKQLPLDQE LLKQVRRMSK CYHDDFWIDE  660
DGNWMLQGWK GKILLAISIW VPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-46	291	682	1	380	Protein SCARECROW
5b3h_A	1e-45	298	682	7	379	Protein SCARECROW
5b3h_D	1e-45	298	682	7	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr003871.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018504688.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A498KAI2	0.0	A0A498KAI2_MALDO; Uncharacterized protein
STRING	XP_009364374.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-175	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]