PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr003870.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 678aa MW: 76868.6 Da PI: 5.9357

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr003870.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	371.9	8.6e-114	306	673	3	372
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL+ecAeav+s d+++a++lL+++++++sp+gd++qRla+yf+ +L+arla+ + y l + + +e l+a+++++ ++P+ k+ h+ aN+ Pbr003870.1 306 RLLTECAEAVASYDQQAASELLKQIRQHSSPYGDSTQRLAHYFADGLEARLAGARTPSYCPLMMHSP----ATEILKAYQVYVTACPFKKMVHFFANR 399 79*************************************************55555544444333....589******************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +I++ +e+++r+HiiDf+ s+GlQWp+L+q+L+++++gpp+lRiT ++ p++g +e++eet++rL+k++e+ +vpfe+nv +ak++e+++le++r+ Pbr003870.1 400 TIMKTAEKATRLHIIDFGSSYGLQWPCLIQSLSEKTGGPPNLRITLIELPQPGfrPAERIEETARRLTKYCERYNVPFEYNV-LAKKWETIRLEDFRM 496 ************************************************9*************************.6********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +++E+++Vn++++l++++de+v +++rd+vL+l+ksl+P+++v+ + +n++ F+ rf +al ++ ++fd++ea++p+e+e+r+ Er+++gr+i Pbr003870.1 497 DRNEVTVVNCMHRLKHMPDETVMANNPRDAVLNLIKSLNPDLFVHGVVNGTYNAPAFVPRFKQALFHFYTFFDMYEATVPHEDEQRMLFERAIFGRDI 594 ********************************************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 +nv+aceg er+er et+++W++r + GFk++pl+ + k++k++ + ++ + +r+e++ +++++gWk+r +++++a Pbr003870.1 595 MNVIACEGLERVERPETYKQWQARYARIGFKQLPLDRELLKKVKTMSKVMGyHRDFRIEDDGQWMLQGWKGRIVIALTA 673 *******************************************99999999*****************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.166	278	654	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-111	306	673	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence Send to blast
MEGFEFGDGS NLVYSDENLA DGFRENHEST NPNYIPSNLD HPSDLSTSLI PGSDAVTIDT 60 NDCNQPVLKY ISDILLEEDL EGKPCMLQES LALQVAEKYF YDALNPEDPP LLNQPSFSVC 120 QSFENLDVGC HSSDGSIASF PSSNGSISAN RGWVWDLSQP SHGIKFLPNE SCETIDLERD 180 QLVPPCSDQW PPGPYTLIGN LASENDGYNS INGPKGKKNH RREDGYDAEE GRRNKQSATA 240 SDNSDLQEIY DTVLQSVNHE PDSCLHDESS KTKGNRMLQH KEQSKGSKSS RAKKQNSNRK 300 VVDLCRLLTE CAEAVASYDQ QAASELLKQI RQHSSPYGDS TQRLAHYFAD GLEARLAGAR 360 TPSYCPLMMH SPATEILKAY QVYVTACPFK KMVHFFANRT IMKTAEKATR LHIIDFGSSY 420 GLQWPCLIQS LSEKTGGPPN LRITLIELPQ PGFRPAERIE ETARRLTKYC ERYNVPFEYN 480 VLAKKWETIR LEDFRMDRNE VTVVNCMHRL KHMPDETVMA NNPRDAVLNL IKSLNPDLFV 540 HGVVNGTYNA PAFVPRFKQA LFHFYTFFDM YEATVPHEDE QRMLFERAIF GRDIMNVIAC 600 EGLERVERPE TYKQWQARYA RIGFKQLPLD RELLKKVKTM SKVMGYHRDF RIEDDGQWML 660 QGWKGRIVIA LTALKPA*

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence Send to blast

MEGFEFGDGS NLVYSDENLA DGFRENHEST NPNYIPSNLD HPSDLSTSLI PGSDAVTIDT  60
NDCNQPVLKY ISDILLEEDL EGKPCMLQES LALQVAEKYF YDALNPEDPP LLNQPSFSVC  120
QSFENLDVGC HSSDGSIASF PSSNGSISAN RGWVWDLSQP SHGIKFLPNE SCETIDLERD  180
QLVPPCSDQW PPGPYTLIGN LASENDGYNS INGPKGKKNH RREDGYDAEE GRRNKQSATA  240
SDNSDLQEIY DTVLQSVNHE PDSCLHDESS KTKGNRMLQH KEQSKGSKSS RAKKQNSNRK  300
VVDLCRLLTE CAEAVASYDQ QAASELLKQI RQHSSPYGDS TQRLAHYFAD GLEARLAGAR  360
TPSYCPLMMH SPATEILKAY QVYVTACPFK KMVHFFANRT IMKTAEKATR LHIIDFGSSY  420
GLQWPCLIQS LSEKTGGPPN LRITLIELPQ PGFRPAERIE ETARRLTKYC ERYNVPFEYN  480
VLAKKWETIR LEDFRMDRNE VTVVNCMHRL KHMPDETVMA NNPRDAVLNL IKSLNPDLFV  540
HGVVNGTYNA PAFVPRFKQA LFHFYTFFDM YEATVPHEDE QRMLFERAIF GRDIMNVIAC  600
EGLERVERPE TYKQWQARYA RIGFKQLPLD RELLKKVKTM SKVMGYHRDF RIEDDGQWML  660
QGWKGRIVIA LTALKPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-45	286	676	1	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr003870.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009364371.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A498KAI2	0.0	A0A498KAI2_MALDO; Uncharacterized protein
STRING	XP_009364371.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-162	SCARECROW-like 14