PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr003868.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 674aa MW: 76703.7 Da PI: 6.5938

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr003868.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	384.8	9.7e-118	300	671	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++lL++cA+av+s d++ a++lL+++++++sp+gd+++Rl +yf+ +L+arla++ + ly+ l + +t+ ++e l+a++++++ +P+ + h++ N Pbr003868.1 300 TNLLTQCAQAVASYDQRTASELLKQIRKHSSPYGDATERLSHYFADGLEARLAGTRTPLYSPLLSIQTP---VAEILKAYQMYVKYCPFKHMLHFLSN 394 789**********************************************************999999...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 ++I + +e+++r+Hi+Df+is+G+QWp+L+q L++R++gpp++R+T+++ p++g +e++eetg+rL+k+A++++v+fe++v +a+++e+++le+L+ Pbr003868.1 395 RTIIKLAEKATRLHIVDFGISYGFQWPCLIQRLSERNGGPPNIRLTAIELPQPGflPTERVEETGRRLKKYAARFNVQFEYKV-IAQKWETIQLEDLK 491 ******************************************************************************9.7********* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++++E ++Vn++++l++++de+v ++s+rd vLkl+++++P+++++ + ++ns+ F++rf eal+++sa+fd++ea++pre+e+r + E+++ g++ Pbr003868.1 492 IDRNELTVVNCMHRLKHIPDETVVVTSPRDIVLKLIRKINPDLFIHGVVNGSYNSPFFVTRFKEALYHFSAMFDMFEATIPREDEQRLMFEKAVYGKD 589 ********************************************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+nvvaceg er+er et+++W+ r ++aGFk+vpl+++ k +k +l+ ++ d + ++e+ +++++gWk+r ++ + +W+ Pbr003868.1 590 IMNVVACEGLERVERPETYKQWQVRYHRAGFKQVPLDQELLKRVKIMLKAMDyHDDFLIDEDGEWMLQGWKGRIIFGLAFWK 671 ***********************************************99999***********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.546	273	650	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-115	300	671	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence Send to blast
MKNFQFLSTQ NLVNGFQVNH EPTNPLFLPT TTDHPTDSGL SSSGSDGDCF DISDSRPVLK 60 YISDILLEED LEDKPCMLQN CLALHAAEKS FYDVLNAKDP PSPDQPPLQV YHSFEHSDDD 120 SSQSCHSSND SRSARTDSVF DSSETLLASD SISGNFGGVG EARTLIPNGR YGIIDVERYQ 180 SVPPGGNTLR RNFAPEPEND GYISANRLKG KKNRQREDGD YADEGRSSKQ SAALGDDAEP 240 QEMFDRVLLC HVNHTHESCI RDKPLGSEVC EKLQPTKQSK GSKTTRSKKQ NNNREVVDLT 300 NLLTQCAQAV ASYDQRTASE LLKQIRKHSS PYGDATERLS HYFADGLEAR LAGTRTPLYS 360 PLLSIQTPVA EILKAYQMYV KYCPFKHMLH FLSNRTIIKL AEKATRLHIV DFGISYGFQW 420 PCLIQRLSER NGGPPNIRLT AIELPQPGFL PTERVEETGR RLKKYAARFN VQFEYKVIAQ 480 KWETIQLEDL KIDRNELTVV NCMHRLKHIP DETVVVTSPR DIVLKLIRKI NPDLFIHGVV 540 NGSYNSPFFV TRFKEALYHF SAMFDMFEAT IPREDEQRLM FEKAVYGKDI MNVVACEGLE 600 RVERPETYKQ WQVRYHRAGF KQVPLDQELL KRVKIMLKAM DYHDDFLIDE DGEWMLQGWK 660 GRIIFGLAFW KPA*

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence Send to blast

MKNFQFLSTQ NLVNGFQVNH EPTNPLFLPT TTDHPTDSGL SSSGSDGDCF DISDSRPVLK  60
YISDILLEED LEDKPCMLQN CLALHAAEKS FYDVLNAKDP PSPDQPPLQV YHSFEHSDDD  120
SSQSCHSSND SRSARTDSVF DSSETLLASD SISGNFGGVG EARTLIPNGR YGIIDVERYQ  180
SVPPGGNTLR RNFAPEPEND GYISANRLKG KKNRQREDGD YADEGRSSKQ SAALGDDAEP  240
QEMFDRVLLC HVNHTHESCI RDKPLGSEVC EKLQPTKQSK GSKTTRSKKQ NNNREVVDLT  300
NLLTQCAQAV ASYDQRTASE LLKQIRKHSS PYGDATERLS HYFADGLEAR LAGTRTPLYS  360
PLLSIQTPVA EILKAYQMYV KYCPFKHMLH FLSNRTIIKL AEKATRLHIV DFGISYGFQW  420
PCLIQRLSER NGGPPNIRLT AIELPQPGFL PTERVEETGR RLKKYAARFN VQFEYKVIAQ  480
KWETIQLEDL KIDRNELTVV NCMHRLKHIP DETVVVTSPR DIVLKLIRKI NPDLFIHGVV  540
NGSYNSPFFV TRFKEALYHF SAMFDMFEAT IPREDEQRLM FEKAVYGKDI MNVVACEGLE  600
RVERPETYKQ WQVRYHRAGF KQVPLDQELL KRVKIMLKAM DYHDDFLIDE DGEWMLQGWK  660
GRIIFGLAFW KPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-49	281	672	1	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr003868.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009364372.2	0.0	PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 14
TrEMBL	A0A498KAI2	0.0	A0A498KAI2_MALDO; Uncharacterized protein
STRING	XP_009364372.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-179	SCARECROW-like 14