PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr003867.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 680aa MW: 77380.6 Da PI: 5.2352

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr003867.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	355.3	9.5e-109	310	677	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL+ cA+ v+s d+++a++ L++++ ++sp+gd +qRla+y++++L+ rl v++ + +lp+se s ++ l+a++++ ++P+ k+s++ aNq Pbr003867.1 310 TLLTICAQSVASYDKRKANEQLKQIRLNSSPYGDDTQRLAHYVANGLELRLGADVPSNA-SLPSSEMS---AADILKAYQTYITACPFQKMSNIYANQ 403 68999*********************************************9666554.45555555...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +Il+ +e+++r+HiiDf++ +G QWp+L+q L++R++gpp+lRiTgv+ p++g +e++e+tg+rLa+++++++vpf++nv +a+++e+++ e++++ Pbr003867.1 404 TILKQAEKATRLHIIDFGVLYGYQWPSLIQDLSKRNGGPPMLRITGVEFPQPGfrPSERVEQTGRRLANYCKRFNVPFKYNV-IATNWETIRSEDIKI 500 ************************************************9************************9.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +++E ++Vn+ ++l++l d++v+ rd+vLkl++++sP+++++ + ++n++ F rf eal ++s+lf+++e+++pre+ +r +E+e++gr++ Pbr003867.1 501 DRDELTVVNCLYRLKNLQDDTVTDCP-RDTVLKLIRRISPDLFIHGVVNGSYNAPFFDIRFREALFHFSSLFNMFEETVPREDPQRLLYEQEVFGRDV 597 *************988887777.******************************************************************* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+aceg +r+er et+++W+ r ++aGF++vp ++++ k++++++++ + + ++++e+ ++++gWk+r ++S W+ Pbr003867.1 598 INVIACEGPRRVERPETYKQWQTRNMRAGFRQVPSDQEILKEVRSMVKRDYHKDFSIDEDGMWMLQGWKGRIFHAISYWK 677 *********************************************99888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.719	282	657	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-106	310	677	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MDTLEDELPS PMNKSVIEQV DDSNANPVHE FGASHDFTDH NFFPVNSDPS DNLPSLPGVS 60 TEVNFPERSE ASNAILKYIS EMLMEEEEYL VNKPCMLQEC LALQAAEKSL HDVLVQDQNP 120 SSSDPLNFIH RNVEAPNEGS NHSSTGSIAA GNRVGLDWGS VQDVFESSRA QIPNPLVLSG 180 EGEITHLKHN SSSVVELREQ QGNDVSFNLD KDGSDSSNGS RSKRSHQRED EDSLDDWRRN 240 KDPAVYADEF ELPQLFDEVL LCQGEKQESN SCSPKESEKL QLNRKSKGSK GKKTRKKKLD 300 DNAGMVDLWT LLTICAQSVA SYDKRKANEQ LKQIRLNSSP YGDDTQRLAH YVANGLELRL 360 GADVPSNASL PSSEMSAADI LKAYQTYITA CPFQKMSNIY ANQTILKQAE KATRLHIIDF 420 GVLYGYQWPS LIQDLSKRNG GPPMLRITGV EFPQPGFRPS ERVEQTGRRL ANYCKRFNVP 480 FKYNVIATNW ETIRSEDIKI DRDELTVVNC LYRLKNLQDD TVTDCPRDTV LKLIRRISPD 540 LFIHGVVNGS YNAPFFDIRF REALFHFSSL FNMFEETVPR EDPQRLLYEQ EVFGRDVINV 600 IACEGPRRVE RPETYKQWQT RNMRAGFRQV PSDQEILKEV RSMVKRDYHK DFSIDEDGMW 660 MLQGWKGRIF HAISYWKPV*

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MDTLEDELPS PMNKSVIEQV DDSNANPVHE FGASHDFTDH NFFPVNSDPS DNLPSLPGVS  60
TEVNFPERSE ASNAILKYIS EMLMEEEEYL VNKPCMLQEC LALQAAEKSL HDVLVQDQNP  120
SSSDPLNFIH RNVEAPNEGS NHSSTGSIAA GNRVGLDWGS VQDVFESSRA QIPNPLVLSG  180
EGEITHLKHN SSSVVELREQ QGNDVSFNLD KDGSDSSNGS RSKRSHQRED EDSLDDWRRN  240
KDPAVYADEF ELPQLFDEVL LCQGEKQESN SCSPKESEKL QLNRKSKGSK GKKTRKKKLD  300
DNAGMVDLWT LLTICAQSVA SYDKRKANEQ LKQIRLNSSP YGDDTQRLAH YVANGLELRL  360
GADVPSNASL PSSEMSAADI LKAYQTYITA CPFQKMSNIY ANQTILKQAE KATRLHIIDF  420
GVLYGYQWPS LIQDLSKRNG GPPMLRITGV EFPQPGFRPS ERVEQTGRRL ANYCKRFNVP  480
FKYNVIATNW ETIRSEDIKI DRDELTVVNC LYRLKNLQDD TVTDCPRDTV LKLIRRISPD  540
LFIHGVVNGS YNAPFFDIRF REALFHFSSL FNMFEETVPR EDPQRLLYEQ EVFGRDVINV  600
IACEGPRRVE RPETYKQWQT RNMRAGFRQV PSDQEILKEV RSMVKRDYHK DFSIDEDGMW  660
MLQGWKGRIF HAISYWKPV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-45	312	677	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	298	RKSKGSKGKKTRKKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr003867.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009364373.1	0.0	PREDICTED: scarecrow-like protein 11
TrEMBL	A0A498KAI2	0.0	A0A498KAI2_MALDO; Uncharacterized protein
STRING	XP_009364373.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-166	GRAS family protein