PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr003843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 202aa MW: 22688.1 Da PI: 8.2719 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Pbr003843.1 33 YECNFCKRGFTNAQALGGHMNIH 55 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.08E-7 | 30 | 60 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 31 | 59 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.593 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MESSRANQEN SDQVMTSDDQ QQEGANKQAA KSYECNFCKR GFTNAQALGG HMNIHRKDKA 60 KLKQVSSSNT IETKHHHQQQ QKQNLLDIPK MPSLYSPILP TINSLQHNKP IGRDIDRNTI 120 RAPWPWFLSE ESDTTMQQLA LLSQTPSHNK DHQNPGTPQV RGDQLEKSLQ LSGSELDLEL 180 RLGPEPQNSS SSTANTTRKF F* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr003843.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ260429 | 0.0 | HQ260429.1 Malus domestica cultivar Fuji C2H2 type single zinc finger protein (SUP3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009364347.1 | 1e-149 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
TrEMBL | K9JIE8 | 1e-128 | K9JIE8_MALDO; C2H2 type single zinc finger protein | ||||
STRING | XP_009364347.1 | 1e-148 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3335 | 31 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 4e-16 | C2H2 family protein |