PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003802.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HB-PHD
Protein Properties Length: 707aa    MW: 79515.6 Da    PI: 9.6432
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003802.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.31.7e-10471515953
                  HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
     Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  ++ +e L ++F +n  ps++ +  L+k+lgL+ ++V+ WF+N R+
  Pbr003802.1 471 RNAVEKLRQVFSENELPSRAVKDNLSKELGLNPEKVSKWFKNARY 515
                  578899*************************************97 PP
2PHD35.62.2e-12231286151
                  SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
          PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                  +C+ C+ +++  +++++lCd +C+ +fH+kCl+++l++e++p+g   w+C+ C++k
  Pbr003802.1 231 FCAKCKLNEAfpDNDIILCDgTCNCAFHQKCLDPPLDTENIPRGeqGWFCKFCECK 286
                  699999955455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.43E-14222289IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.0E-11227287IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.184229286IPR019787Zinc finger, PHD-finger
PfamPF006281.1E-9231286IPR019787Zinc finger, PHD-finger
SMARTSM002491.9E-7231284IPR001965Zinc finger, PHD-type
CDDcd155042.32E-30231283No hitNo description
PROSITE patternPS013590232283IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.609.7E-13451514IPR009057Homeodomain-like
SuperFamilySSF466892.82E-10456517IPR009057Homeodomain-like
PROSITE profilePS5007112.341460520IPR001356Homeobox domain
SMARTSM003898.3E-9462524IPR001356Homeobox domain
CDDcd000863.05E-8468515No hitNo description
PfamPF000467.5E-8471515IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MDTLVKNMRV PGKKSSFKEY GKPGYSGSLA NLISSPKVKK GGKVPHVKKL KSKSSKTIIA  60
SALSKKRGAN SSSNASRNYD AYNKLLSRKG FRKEHDTDSS KNPSAVKLQH NKLSENGSDE  120
KGEKRRRKKK PKKDKVELDE TSRLQRRTRY LLIKIKLEQN LIDAYAGEGW KGQSREKIRP  180
EMELQRANKQ ILNCKLRIRD AIHQLDSLSS VGSIADSFIS PDGSVSHEHI FCAKCKLNEA  240
FPDNDIILCD GTCNCAFHQK CLDPPLDTEN IPRGEQGWFC KFCECKMEIL ELVNAHLGTC  300
FPMNSGWQDV FKEEAAFPHG KNSLLNPDEE WPSDDSEDDD YNPERNENSC SRGGSNDIAS  360
EEEFSTDVSV GSDVSTDGEI VSGRRQKRSV DYKKLYDEMF GKDGPLLEQI SDDEDWGPSK  420
RKRRGKESDA ASTLMTLYES ERNPDVDRTE KKSSQHSSDT QVRRSCFRIP RNAVEKLRQV  480
FSENELPSRA VKDNLSKELG LNPEKVSKWF KNARYLALKT RKGASDKDLD TFTPGISKEP  540
GYENVTGKAA DLMASDSDDD TLAETVVHSP KNVKAFRRKH PKSLSSPLRK SQQKGPSCGS  600
RAKSNEVFVF QNKDGKELSD DVSLKKLRNT RTKEKRANLI AGGGEDGCRV AELEMERLCK  660
AKGRLEYVRQ KLLKFQTVKA KQNSNISRLH EQSVIYVPIA ELKEKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122130EKRRRKKKP
2123129KRRRKKK
3124132RRRKKKPKK
4125130RRKKKP
5126133RKKKPKKD
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003802.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349156.20.0PREDICTED: pathogenesis-related homeodomain protein-like
SwissprotP487851e-155PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A498I5V60.0A0A498I5V6_MALDO; Uncharacterized protein
STRINGXP_008388572.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-152pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]