PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr003769.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 259aa MW: 28909.4 Da PI: 9.3126 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.9 | 4e-09 | 131 | 154 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++Cr f+r GtC+yGd+C+F H+ Pbr003769.1 131 VRICRSFFRWGTCSYGDKCRFRHV 154 799******************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.57E-7 | 69 | 102 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-12 | 69 | 102 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 71 | 98 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.008 | 73 | 97 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.723 | 128 | 156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-4 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-7 | 130 | 154 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.23E-6 | 131 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-7 | 132 | 154 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSTPLPTQQF FARYLESVDN GRQIKHQIPT EEKEIKAQSD IKSQAFKKPR TSEAVLNSNA 60 ASGQNKMLPS YYNTKLCRKF QMGCCSSGQR CSFAHGTSDL RTLRDAQGME TEKGNLARRT 120 WNGDHGSSNG VRICRSFFRW GTCSYGDKCR FRHVNPENIR DSSFTSISTA GGSAQFDCKK 180 SLECGSVQAN SLMTYTRGNN ASNRRMGVAT AYKHGQSTQC NLERNELEKL SRIYADWIED 240 MPLLHGSSSK VECYSSLV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr003769.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009362553.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 28-like | ||||
TrEMBL | A0A498HJ71 | 1e-164 | A0A498HJ71_MALDO; Uncharacterized protein | ||||
STRING | XP_009362553.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15275 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 6e-13 | C3H family protein |