PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr003767.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 396aa MW: 44531.4 Da PI: 8.3001

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr003767.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.3	6.2e-09	132	155	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++Cr f+r GtC+yGd+C+F H+ Pbr003767.1 132 VRICRSFFRWGTCSYGDKCRFRHV 155 799******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.2E-12	69	101	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-7	69	101	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.022	71	97	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.042	71	98	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-4	129	156	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.798	129	157	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-6	131	155	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-6	132	158	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.0E-7	133	155	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MSTPLPTPQF FAQYLESGDS GRQMKHQIPT EEREIKAQSD INSQAFKKPR TSDAVSNSNA 60 ASGQNKMLPS YYKTQLCRKF QMGCCFSGQR CSFAHGTSDL RRTLRDAQGM ETEKGSLVRR 120 TWNVDHGSSN GVRICRSFFR WGTCSYGDKC RFRHVSPENI RDSSFISIST AGGSAQFDCK 180 KSMELRKLCG YTTPECGSVQ ANSLTTSMRG NNASNRRMGI ATAYKQGQST QCNLEWNELE 240 KLSRIYADWI EDMPLLHGSS NKVECYSSLA SSHAVCNRYS MFVSLELALV KLQANFCLYA 300 FDYLHSNSPP QDGKNHSNVV DISSLKNMKH VHILHIVEYP NLDELEIYCA ERARKDPRMS 360 MMTNHACFLG LQFVQDAEIL GEECPALKKL PLKED*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MSTPLPTPQF FAQYLESGDS GRQMKHQIPT EEREIKAQSD INSQAFKKPR TSDAVSNSNA  60
ASGQNKMLPS YYKTQLCRKF QMGCCFSGQR CSFAHGTSDL RRTLRDAQGM ETEKGSLVRR  120
TWNVDHGSSN GVRICRSFFR WGTCSYGDKC RFRHVSPENI RDSSFISIST AGGSAQFDCK  180
KSMELRKLCG YTTPECGSVQ ANSLTTSMRG NNASNRRMGI ATAYKQGQST QCNLEWNELE  240
KLSRIYADWI EDMPLLHGSS NKVECYSSLA SSHAVCNRYS MFVSLELALV KLQANFCLYA  300
FDYLHSNSPP QDGKNHSNVV DISSLKNMKH VHILHIVEYP NLDELEIYCA ERARKDPRMS  360
MMTNHACFLG LQFVQDAEIL GEECPALKKL PLKED*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr003767.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009349123.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 28-like
TrEMBL	A0A498HJ71	1e-175	A0A498HJ71_MALDO; Uncharacterized protein
STRING	XP_009349123.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15275	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35430.1	2e-12	C3H family protein